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v1.0.9.7 RunModel* documentations updated and fixed

parent e70b9ae3
dev 115-add-pcict-date-format-managment 118-plot-outputsmodel-remove-case-sensitivity-to-the-which-argument 136-decreased-performance-of-calibration-execution-time 161-runmodel_lag-proposal-for-a-better-transformation-and-screening-of-the-parameters 165-add-missing-isintstore-argument-in-createcaliboptions 171-check-error-direct-call-of-as-data-frame-posixct-is-deprecated-use-as-data-frame-vector-or-as 191-speed-up-runmodel_lag-when-it-is-used-alone 33-merge-airgr-and-airgrplus-functions 60-migrate-transfoparam-functions-and-createcaliboptions-to-s3-methods 96-parallelize-the-grid-screening-step-during-calibration airGRplus master rmOptions CRAN_v1.7.6 CRAN_v1.7.5 CRAN_v1.7.4 CRAN_v1.7.3 CRAN_v1.7.2 CRAN_v1.7.1 CRAN_v1.7.0 CRAN_v1.6.12 CRAN_v1.6.11 CRAN_v1.6.10.4 CRAN_v1.6.9.27 CRAN_v1.6.9.24 CRAN_v1.6.9.23 CRAN_v1.6.9.21 CRAN_v1.4.3.65 CRAN_v1.4.3.60 CRAN_v1.4.3.52 CRAN_v1.3.2.42 CRAN_v1.3.2.41 CRAN_v1.3.2.40 CRAN_v1.3.2.39 CRAN_v1.3.2.23 CRAN_v1.3.2.17 CRAN_v1.2.13.16 CRAN_v1.2.13.13 CRAN_v1.0.14.1 CRAN_v1.0.13.19 CRAN_v1.0.10.11 CRAN_v1.0.9.64
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DESCRIPTION
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Package: airGR
Type: Package
Title: Suite of GR Hydrological Models for Precipitation-Runoff Modelling
Version: 1.0.9.6
Date: 2017-06-26
Version: 1.0.9.7
Date: 2017-07-11
Authors@R: c(
person("Laurent", "Coron", role = c("aut", "trl")),
person("Charles", "Perrin", role = c("aut", "ths")),
......
man/RunModel.Rd
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......@@ -52,9 +52,9 @@ InputsCrit <- CreateInputsCrit(FUN_CRIT = ErrorCrit_NSE, InputsModel = InputsMo
OutputsCrit <- ErrorCrit_NSE(InputsCrit = InputsCrit, OutputsModel = OutputsModel)
}
\author{
Laurent Coron (June 2014)
Laurent Coron
}
\seealso{
\code{\link{RunModel_GR4J}}, \code{\link{RunModel_CemaNeigeGR4J}}, \code{\link{CreateInputsModel}}, \code{\link{CreateRunOptions}}.
\code{\link{RunModel_GR4J}}, \code{\link{RunModel_CemaNeigeGR4J}}, \code{\link{CreateInputsModel}}, \code{\link{CreateRunOptions}}, \code{\link{CreateIniStates}}.
}
man/RunModel_CemaNeige.Rd
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......@@ -70,7 +70,7 @@ plot(OutputsModel)
}
\author{
Laurent Coron (January 2014)
Laurent Coron
}
\references{
Valéry, A., V. Andréassian and C. Perrin (2014),
......@@ -81,6 +81,6 @@ Valéry, A., V. Andréassian and C. Perrin (2014),
Part 2 - Sensitivity analysis of the Cemaneige snow accounting routine on 380 catchments, Journal of Hydrology, doi:10.1016/j.jhydrol.2014.04.058.
}
\seealso{
\code{\link{RunModel_CemaNeigeGR4J}}, \code{\link{CreateInputsModel}}, \code{\link{CreateRunOptions}}.
\code{\link{RunModel_CemaNeigeGR4J}}, \code{\link{CreateInputsModel}}, \code{\link{CreateRunOptions}}, \code{\link{CreateIniStates}}.
}
man/RunModel_CemaNeigeGR4J.Rd
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− 5
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......@@ -28,10 +28,10 @@ CemaNeige X2 \tab degree-day melt coefficient [mm/°C/d] \
\emph{$Precip } \tab [numeric] series of input total precipitation [mm/d] \cr
\emph{$Prod } \tab [numeric] series of production store level [mm] \cr
\emph{$Pn } \tab [numeric] series of net rainfall [mm/d] \cr
\emph{$Ps } \tab [numeric] series of the part of Ps filling the production store [mm/d] \cr
\emph{$Ps } \tab [numeric] series of the part of Pn filling the production store [mm/d] \cr
\emph{$AE } \tab [numeric] series of actual evapotranspiration [mm/d] \cr
\emph{$Perc } \tab [numeric] series of percolation (PERC) [mm/d] \cr
\emph{$PR } \tab [numeric] series of PR=PN-PS+PERC [mm/d] \cr
\emph{$PR } \tab [numeric] series of PR=Pn-Ps+Perc [mm/d] \cr
\emph{$Q9 } \tab [numeric] series of UH1 outflow (Q9) [mm/d] \cr
\emph{$Q1 } \tab [numeric] series of UH2 outflow (Q1) [mm/d] \cr
\emph{$Rout } \tab [numeric] series of routing store level [mm] \cr
......@@ -41,7 +41,7 @@ CemaNeige X2 \tab degree-day melt coefficient [mm/°C/d] \
\emph{$AExch } \tab [numeric] series of actual exchange between catchments (1+2) [mm/d] \cr
\emph{$QR } \tab [numeric] series of routing store outflow (QR) [mm/d] \cr
\emph{$QD } \tab [numeric] series of direct flow from UH2 after exchange (QD) [mm/d] \cr
\emph{$Qsim } \tab [numeric] series of Qsim [mm/d] \cr
\emph{$Qsim } \tab [numeric] series of simulated discharge [mm/d] \cr
\emph{$CemaNeigeLayers} \tab [list] list of CemaNeige outputs (1 list per layer) \cr
\emph{$CemaNeigeLayers[[iLayer]]$Pliq } \tab [numeric] series of liquid precip. [mm/d] \cr
\emph{$CemaNeigeLayers[[iLayer]]$Psol } \tab [numeric] series of solid precip. [mm/d] \cr
......@@ -97,7 +97,7 @@ InputsCrit <- CreateInputsCrit(FUN_CRIT = ErrorCrit_NSE, InputsModel = InputsMo
OutputsCrit <- ErrorCrit_NSE(InputsCrit = InputsCrit, OutputsModel = OutputsModel)
}
\author{
Laurent Coron, Audrey Valéry, Claude Michel, Charles Perrin, Vazken Andréassian (December 2013)
Laurent Coron, Audrey Valéry, Claude Michel, Charles Perrin, Vazken Andréassian
}
\references{
Perrin, C., C. Michel and V. Andréassian (2003),
......@@ -112,6 +112,6 @@ Perrin, C., C. Michel and V. Andréassian (2003),
}
\seealso{
\code{\link{RunModel_CemaNeigeGR5J}}, \code{\link{RunModel_CemaNeigeGR6J}}, \code{\link{RunModel_GR4J}},
\code{\link{CreateInputsModel}}, \code{\link{CreateRunOptions}}.
\code{\link{CreateInputsModel}}, \code{\link{CreateRunOptions}}, \code{\link{CreateIniStates}}.
}
man/RunModel_CemaNeigeGR5J.Rd
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− 5
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......@@ -29,10 +29,10 @@ CemaNeige X2 \tab degree-day melt coefficient [mm/°C/d] \
\emph{$Precip } \tab [numeric] series of input total precipitation [mm/d] \cr
\emph{$Prod } \tab [numeric] series of production store level [mm] \cr
\emph{$Pn } \tab [numeric] series of net rainfall [mm/d] \cr
\emph{$Ps } \tab [numeric] series of the part of Ps filling the production store [mm/d] \cr
\emph{$Ps } \tab [numeric] series of the part of Pn filling the production store [mm/d] \cr
\emph{$AE } \tab [numeric] series of actual evapotranspiration [mm/d] \cr
\emph{$Perc } \tab [numeric] series of percolation (PERC) [mm/d] \cr
\emph{$PR } \tab [numeric] series of PR=PN-PS+PERC [mm/d] \cr
\emph{$PR } \tab [numeric] series of PR=Pn-Ps+Perc [mm/d] \cr
\emph{$Q9 } \tab [numeric] series of UH1 outflow (Q9) [mm/d] \cr
\emph{$Q1 } \tab [numeric] series of UH2 outflow (Q1) [mm/d] \cr
\emph{$Rout } \tab [numeric] series of routing store level [mm] \cr
......@@ -42,7 +42,7 @@ CemaNeige X2 \tab degree-day melt coefficient [mm/°C/d] \
\emph{$AExch } \tab [numeric] series of actual exchange between catchments (1+2) [mm/d] \cr
\emph{$QR } \tab [numeric] series of routing store outflow (QR) [mm/d] \cr
\emph{$QD } \tab [numeric] series of direct flow from UH2 after exchange (QD) [mm/d] \cr
\emph{$Qsim } \tab [numeric] series of Qsim [mm/d] \cr
\emph{$Qsim } \tab [numeric] series of simulated discharge [mm/d] \cr
\emph{$CemaNeigeLayers} \tab [list] list of CemaNeige outputs (1 list per layer) \cr
\emph{$CemaNeigeLayers[[iLayer]]$Pliq } \tab [numeric] series of liquid precip. [mm/d] \cr
\emph{$CemaNeigeLayers[[iLayer]]$Psol } \tab [numeric] series of solid precip. [mm/d] \cr
......@@ -98,7 +98,7 @@ InputsCrit <- CreateInputsCrit(FUN_CRIT = ErrorCrit_NSE, InputsModel = InputsMo
OutputsCrit <- ErrorCrit_NSE(InputsCrit = InputsCrit, OutputsModel = OutputsModel)
}
\author{
Laurent Coron, Audrey Valéry, Claude Michel, Nicolas Le Moine, Charles Perrin, Vazken Andréassian (December 2013)
Laurent Coron, Audrey Valéry, Claude Michel, Nicolas Le Moine, Charles Perrin, Vazken Andréassian
}
\references{
Le Moine, N. (2008), Le bassin versant de surface vu par le souterrain : une voie d'amélioration des performances
......@@ -115,6 +115,6 @@ Le Moine, N. (2008), Le bassin versant de surface vu par le souterrain : une voi
}
\seealso{
\code{\link{RunModel_CemaNeigeGR4J}}, \code{\link{RunModel_CemaNeigeGR6J}}, \code{\link{RunModel_GR5J}},
\code{\link{CreateInputsModel}}, \code{\link{CreateRunOptions}}.
\code{\link{CreateInputsModel}}, \code{\link{CreateRunOptions}}, \code{\link{CreateIniStates}}.
}
man/RunModel_GR1A.Rd
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......@@ -21,7 +21,7 @@ GR1A X1 \tab model parameter [-] \cr
\emph{$DatesR } \tab [POSIXlt] series of dates \cr
\emph{$PotEvap } \tab [numeric] series of input potential evapotranspiration [mm/y] \cr
\emph{$Precip } \tab [numeric] series of input total precipitation [mm/y] \cr
\emph{$Qsim } \tab [numeric] series of Qsim [mm/y] \cr
\emph{$Qsim } \tab [numeric] series of simulated discharge [mm/y] \cr
\emph{$StateEnd} \tab [numeric] states at the end of the run (NULL) [-] \cr
}
(refer to the provided references or to the package source code for further details on these model outputs)
......@@ -76,11 +76,14 @@ InputsCrit <- CreateInputsCrit(FUN_CRIT = ErrorCrit_NSE, InputsModel = InputsMo
OutputsCrit <- ErrorCrit_NSE(InputsCrit = InputsCrit, OutputsModel = OutputsModel)
}
\author{
Laurent Coron, Claude Michel (March 2015)
Laurent Coron, Claude Michel
}
\references{
Mouelhi S. (2003),
Vers une chaîne cohérente de modèles pluie-débit conceptuels globaux aux pas de temps pluriannuel, annuel, mensuel et journalier,
PhD thesis (in French), ENGREF, Cemagref Antony, France. \cr
}
\seealso{
\code\code{\link{CreateInputsModel}}, \code{\link{CreateRunOptions}}.
}
man/RunModel_GR2M.Rd
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......@@ -22,7 +22,7 @@ GR2M X2 \tab groundwater exchange coefficient [-] \cr
\emph{$DatesR } \tab [POSIXlt] series of dates \cr
\emph{$PotEvap } \tab [numeric] series of input potential evapotranspiration [mm/month] \cr
\emph{$Precip } \tab [numeric] series of input total precipitation [mm/month] \cr
\emph{$Qsim } \tab [numeric] series of Qsim [mm/month] \cr
\emph{$Qsim } \tab [numeric] series of simulated discharge [mm/month] \cr
\emph{$StateEnd} \tab [numeric] states at the end of the run (production store level and routing store level) [mm], \cr\tab see \code{\link{CreateIniStates}} for more details \cr
}
(refer to the provided references or to the package source code for further details on these model outputs)
......@@ -75,7 +75,7 @@ InputsCrit <- CreateInputsCrit(FUN_CRIT = ErrorCrit_NSE, InputsModel = InputsMo
OutputsCrit <- ErrorCrit_NSE(InputsCrit = InputsCrit, OutputsModel = OutputsModel)
}
\author{
Laurent Coron, Claude Michel, Safouane Mouelhi (March 2015)
Laurent Coron, Claude Michel, Safouane Mouelhi
}
\references{
Mouelhi S. (2003),
......@@ -85,4 +85,6 @@ Mouelhi S. (2003),
Stepwise development of a two-parameter monthly water balance model,
Journal of Hydrology, 318(1-4), 200-214, doi:10.1016/j.jhydrol.2005.06.014.
}
\seealso{
\code{\code{\link{CreateInputsModel}}, \code{\link{CreateRunOptions}}, \code{\link{CreateIniStates}}.
}
man/RunModel_GR4H.Rd
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− 3
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......@@ -27,7 +27,7 @@ GR4H X4 \tab unit hydrograph time constant [h]
\emph{$Prod } \tab [numeric] series of production store level [mm] \cr
\emph{$AE } \tab [numeric] series of actual evapotranspiration [mm/h] \cr
\emph{$Perc } \tab [numeric] series of percolation (PERC) [mm/h] \cr
\emph{$PR } \tab [numeric] series of PR=PN-PS+PERC [mm/h] \cr
\emph{$PR } \tab [numeric] series of PR=Pn-Ps+Perc [mm/h] \cr
\emph{$Q9 } \tab [numeric] series of UH1 outflow (Q9) [mm/h] \cr
\emph{$Q1 } \tab [numeric] series of UH2 outflow (Q1) [mm/h] \cr
\emph{$Rout } \tab [numeric] series of routing store level [mm] \cr
......@@ -35,7 +35,7 @@ GR4H X4 \tab unit hydrograph time constant [h]
\emph{$AExch } \tab [numeric] series of actual exchange between catchments (1+2) [mm/h] \cr
\emph{$QR } \tab [numeric] series of routing store outflow (QR) [mm/h] \cr
\emph{$QD } \tab [numeric] series of direct flow from UH2 after exchange (QD) [mm/h] \cr
\emph{$Qsim } \tab [numeric] series of Qsim [mm/h] \cr
\emph{$Qsim } \tab [numeric] series of simulated discharge [mm/h] \cr
\emph{$StateEnd} \tab [numeric] states at the end of the run (res. levels, UH1 levels, UH2 levels) [mm], see \code{\link{CreateIniStates}} for more details \cr
}
(refer to the provided references or to the package source code for further details on these model outputs)
......@@ -88,6 +88,6 @@ Le Moine, N. (2008), Le bassin versant de surface vu par le souterrain : une voi
}
\seealso{
\code{\link{RunModel_GR4J}},
\code{\link{CreateInputsModel}}, \code{\link{CreateRunOptions}}.
\code{\link{CreateInputsModel}}, \code{\link{CreateRunOptions}}, \code{\link{CreateIniStates}}.
}
man/RunModel_GR4J.Rd
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− 5
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......@@ -26,10 +26,10 @@ GR4J X4 \tab unit hydrograph time constant [d]
\emph{$Precip } \tab [numeric] series of input total precipitation [mm/d] \cr
\emph{$Prod } \tab [numeric] series of production store level [mm] \cr
\emph{$Pn } \tab [numeric] series of net rainfall [mm/d] \cr
\emph{$Ps } \tab [numeric] series of the part of Ps filling the production store [mm/d] \cr
\emph{$Ps } \tab [numeric] series of the part of Pn filling the production store [mm/d] \cr
\emph{$AE } \tab [numeric] series of actual evapotranspiration [mm/d] \cr
\emph{$Perc } \tab [numeric] series of percolation (PERC) [mm/d] \cr
\emph{$PR } \tab [numeric] series of PR=PN-PS+PERC [mm/d] \cr
\emph{$PR } \tab [numeric] series of PR=Pn-Ps+Perc [mm/d] \cr
\emph{$Q9 } \tab [numeric] series of UH1 outflow (Q9) [mm/d] \cr
\emph{$Q1 } \tab [numeric] series of UH2 outflow (Q1) [mm/d] \cr
\emph{$Rout } \tab [numeric] series of routing store level [mm] \cr
......@@ -39,7 +39,7 @@ GR4J X4 \tab unit hydrograph time constant [d]
\emph{$AExch } \tab [numeric] series of actual exchange between catchments (1+2) [mm/d] \cr
\emph{$QR } \tab [numeric] series of routing store outflow (QR) [mm/d] \cr
\emph{$QD } \tab [numeric] series of direct flow from UH2 after exchange (QD) [mm/d] \cr
\emph{$Qsim } \tab [numeric] series of Qsim [mm/d] \cr
\emph{$Qsim } \tab [numeric] series of simulated discharge [mm/d] \cr
\emph{$StateEnd} \tab [numeric] states at the end of the run (res. levels, UH1 levels, UH2 levels) [mm], \cr\tab see \code{\link{CreateIniStates}} for more details \cr
}
(refer to the provided references or to the package source code for further details on these model outputs)
......@@ -82,7 +82,7 @@ InputsCrit <- CreateInputsCrit(FUN_CRIT = ErrorCrit_NSE, InputsModel = InputsMo
OutputsCrit <- ErrorCrit_NSE(InputsCrit = InputsCrit, OutputsModel = OutputsModel)
}
\author{
Laurent Coron, Claude Michel, Charles Perrin (December 2013)
Laurent Coron, Claude Michel, Charles Perrin
}
\references{
Perrin, C., C. Michel and V. Andréassian (2003),
......@@ -91,6 +91,6 @@ Perrin, C., C. Michel and V. Andréassian (2003),
}
\seealso{
\code{\link{RunModel_GR5J}}, \code{\link{RunModel_GR6J}}, \code{\link{RunModel_CemaNeigeGR4J}},
\code{\link{CreateInputsModel}}, \code{\link{CreateRunOptions}}.
\code{\link{CreateInputsModel}}, \code{\link{CreateRunOptions}}, \code{\link{CreateIniStates}}.
}
man/RunModel_GR5J.Rd
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− 5
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......@@ -27,10 +27,10 @@ GR5J X5 \tab intercatchment exchange threshold [-] \cr
\emph{$Precip } \tab [numeric] series of input total precipitation [mm/d] \cr
\emph{$Prod } \tab [numeric] series of production store level [mm] \cr
\emph{$Pn } \tab [numeric] series of net rainfall [mm/d] \cr
\emph{$Ps } \tab [numeric] series of the part of Ps filling the production store [mm/d] \cr
\emph{$Ps } \tab [numeric] series of the part of Pn filling the production store [mm/d] \cr
\emph{$AE } \tab [numeric] series of actual evapotranspiration [mm/d] \cr
\emph{$Perc } \tab [numeric] series of percolation (PERC) [mm/d] \cr
\emph{$PR } \tab [numeric] series of PR=PN-PS+PERC [mm/d] \cr
\emph{$PR } \tab [numeric] series of PR=Pn-Ps+Perc [mm/d] \cr
\emph{$Q9 } \tab [numeric] series of UH1 outflow (Q9) [mm/d] \cr
\emph{$Q1 } \tab [numeric] series of UH2 outflow (Q1) [mm/d] \cr
\emph{$Rout } \tab [numeric] series of routing store level [mm] \cr
......@@ -40,7 +40,7 @@ GR5J X5 \tab intercatchment exchange threshold [-] \cr
\emph{$AExch } \tab [numeric] series of actual exchange between catchments (1+2) [mm/d] \cr
\emph{$QR } \tab [numeric] series of routing store outflow (QR) [mm/d] \cr
\emph{$QD } \tab [numeric] series of direct flow from UH2 after exchange (QD) [mm/d] \cr
\emph{$Qsim } \tab [numeric] series of Qsim [mm/d] \cr
\emph{$Qsim } \tab [numeric] series of simulated discharge [mm/d] \cr
\emph{$StateEnd} \tab [numeric] states at the end of the run (res. levels, UH1 levels, UH2 levels) [mm], \cr\tab see \code{\link{CreateIniStates}} for more details \cr
}
(refer to the provided references or to the package source code for further details on these model outputs)
......@@ -84,7 +84,7 @@ InputsCrit <- CreateInputsCrit(FUN_CRIT = ErrorCrit_NSE, InputsModel = InputsMo
OutputsCrit <- ErrorCrit_NSE(InputsCrit = InputsCrit, OutputsModel = OutputsModel)
}
\author{
Laurent Coron, Claude Michel, Nicolas Le Moine (December 2013)
Laurent Coron, Claude Michel, Nicolas Le Moine
}
\references{
Le Moine, N. (2008), Le bassin versant de surface vu par le souterrain : une voie d'amélioration des performances
......@@ -95,6 +95,6 @@ Pushpalatha, R., C. Perrin, N. Le Moine, T. Mathevet, and V. Andréassian (2011)
}
\seealso{
\code{\link{RunModel_GR4J}}, \code{\link{RunModel_GR6J}}, \code{\link{RunModel_CemaNeigeGR5J}},
\code{\link{CreateInputsModel}}, \code{\link{CreateRunOptions}}.
\code{\link{CreateInputsModel}}, \code{\link{CreateRunOptions}}, \code{\link{CreateIniStates}}.
}
man/RunModel_GR6J.Rd
+ 4
− 4
View file @ 2718be3e
......@@ -28,10 +28,10 @@ GR6J X6 \tab coefficient for emptying exponential store [mm]
\emph{$Precip } \tab [numeric] series of input total precipitation [mm/d] \cr
\emph{$Prod } \tab [numeric] series of production store level [mm] \cr
\emph{$Pn } \tab [numeric] series of net rainfall [mm/d] \cr
\emph{$Ps } \tab [numeric] series of the part of Ps filling the production store [mm/d] \cr
\emph{$Ps } \tab [numeric] series of the part of Pn filling the production store [mm/d] \cr
\emph{$AE } \tab [numeric] series of actual evapotranspiration [mm/d] \cr
\emph{$Perc } \tab [numeric] series of percolation (PERC) [mm/d] \cr
\emph{$PR } \tab [numeric] series of PR=PN-PS+PERC [mm/d] \cr
\emph{$PR } \tab [numeric] series of PR=Pn-Ps+Perc [mm/d] \cr
\emph{$Q9 } \tab [numeric] series of UH1 outflow (Q9) [mm/d] \cr
\emph{$Q1 } \tab [numeric] series of UH2 outflow (Q1) [mm/d] \cr
\emph{$Rout } \tab [numeric] series of routing store level [mm] \cr
......@@ -86,7 +86,7 @@ InputsCrit <- CreateInputsCrit(FUN_CRIT = ErrorCrit_NSE, InputsModel = InputsMo
OutputsCrit <- ErrorCrit_NSE(InputsCrit = InputsCrit, OutputsModel = OutputsModel)
}
\author{
Laurent Coron, Claude Michel, Charles Perrin, Raji Pushpalatha, Nicolas Le Moine (December 2013)
Laurent Coron, Claude Michel, Charles Perrin, Raji Pushpalatha, Nicolas Le Moine
}
\references{
Pushpalatha, R., C. Perrin, N. Le Moine, T. Mathevet and V. Andréassian (2011),
......@@ -95,6 +95,6 @@ Pushpalatha, R., C. Perrin, N. Le Moine, T. Mathevet and V. Andréassian (2011),
}
\seealso{
\code{\link{RunModel_GR4J}}, \code{\link{RunModel_GR5J}}, \code{\link{RunModel_CemaNeigeGR6J}},
\code{\link{CreateInputsModel}}, \code{\link{CreateRunOptions}}.
\code{\link{CreateInputsModel}}, \code{\link{CreateRunOptions}}, \code{\link{CreateIniStates}}.
}
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