Commit 802ec497 authored by patrick.lambert's avatar patrick.lambert
Browse files

exploration of death Basin weight in RmarkDown

parent e564e663
......@@ -123,3 +123,5 @@ org.*
/src/main/java/species/testAlea.java
/data/input/northeastamerica/shape/*.qix
/src/main/java/species/Essai.java
/exploration/GR3D_Rdescription/.RData
/exploration/GR3D_Rdescription/.Rhistory
......@@ -66,6 +66,16 @@ logitKernel = function(distance, alpha0, alpha1, meanInterDistance, standardDev
alpha2 * (basinSurface - meanBasinSurface) / standardDeviationBasinSurface +
alpha3 * (fishLength - meanLengthAtRepro) / standardDeviationInterDistance;
w = 1 / (1+ exp(-logitW))
return(w)
}
\ No newline at end of file
W = 1 / (1+ exp(-logitW))
return(W)
}
# extended negative exponential kernel
eneKernel = function(distance, alpha_D, beta_D){
W = exp(-alpha_D * distance ^ beta_D)
return(W)
}
strayerSurvival = function(distance, m ){
# m: extra mortality rate for strayers (L-1)
return(exp(-m * distance))
}
This diff is collapsed.
@article{rougier2015,
title = {The combined use of empirical and mechanistic species distribution models benefits low conservation status species},
author = {{Rougier}, {Thibaud} and {Lassalle}, {Géraldine} and {Drouineau}, {Hilaire} and {Dumoulin}, {Nicolas} and {Faure}, {Thierry} and {Deffuant}, {Guillaume} and {Rochard}, {Eric} and {Lambert}, {Patrick}},
year = {2015},
date = {2015},
journal = {PLoS ONE},
pages = {e0139194},
volume = {10},
number = {10},
doi = {10.1371/journal.pone.0139194}
}
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