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Commit 8215307d authored by Lambert Patrick's avatar Lambert Patrick
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with all the observers

parent 0576f6d8
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data/input/atlanticarea/obsRealAA.xml
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......@@ -7,7 +7,7 @@
<title>Atlantic Area</title>
<threshold>10000</threshold>
</environment.BasinNetworkObserverWithContinent>
<environment.BasinNetworkObserverPresence>
<title>Shad presence in Atlantic Area</title>
<presenceFileName>data/input/atlanticarea/aa_presence.csv</presenceFileName>
......@@ -16,40 +16,129 @@
</observers>
</fr.cemagref.observation.kernel.ObservablesHandler>
</entry>
<!-- <entry> <java-class>species.DiadromousFishGroup</java-class> <fr.cemagref.observation.kernel.ObservablesHandler> <observers>
<fr.cemagref.observation.observers.jfreechart.TemporalSerieChart> <graphType>LINE</graphType> <title>Number of colonized
basins</title> <xAxisLabel>Time (season)</xAxisLabel> <yAxisLabel>number of basins</yAxisLabel> <variableName>getNbColonizedBasins</variableName>
</fr.cemagref.observation.observers.jfreechart.TemporalSerieChart> <fr.cemagref.observation.observers.jfreechart.TemporalSerieChart>
<graphType>LINE</graphType> <title>Total Abundance</title> <xAxisLabel>Time (season)</xAxisLabel> <yAxisLabel>number of fishes</yAxisLabel>
<variableName>getFishEffective</variableName> </fr.cemagref.observation.observers.jfreechart.TemporalSerieChart> <fr.cemagref.observation.observers.jfreechart.TemporalSerieChart>
<graphType>LINE</graphType> <title>Abundance of spawners</title> <xAxisLabel>Time (season)</xAxisLabel> <yAxisLabel>number
of fishes</yAxisLabel> <variableName>getSpawnerEffective</variableName> </fr.cemagref.observation.observers.jfreechart.TemporalSerieChart>
<fr.cemagref.observation.observers.jfreechart.TemporalSerieChart> <graphType>LINE</graphType> <title>Abundance of male spawners</title>
<xAxisLabel>Time (season)</xAxisLabel> <yAxisLabel>number of fishes</yAxisLabel> <variableName>getMaleSpawnerEffective</variableName>
</fr.cemagref.observation.observers.jfreechart.TemporalSerieChart> <fr.cemagref.observation.observers.jfreechart.TemporalSerieChart>
<graphType>LINE</graphType> <title>Abundance of female spawners</title> <xAxisLabel>Time (season)</xAxisLabel> <yAxisLabel>number
of fishes</yAxisLabel> <variableName>getFemaleSpawnerEffective</variableName> </fr.cemagref.observation.observers.jfreechart.TemporalSerieChart>
<miscellaneous.TemporalRangeSerieChart> <title>Range distribution</title> <xAxisLabel>Time (season)</xAxisLabel> <yAxisLabel>latitude</yAxisLabel>
<variableName>getRangeDistributionWithLat</variableName> </miscellaneous.TemporalRangeSerieChart> <fr.cemagref.observation.observers.jfreechart.TemporalSerieChart>
<graphType>LINE</graphType> <title>Mean age at first reproduction for female</title> <xAxisLabel>Time (season)</xAxisLabel>
<yAxisLabel>age (year)</yAxisLabel> <variableName>getMeanAgeOfFirstReprodutionForFemale</variableName> </fr.cemagref.observation.observers.jfreechart.TemporalSerieChart>
<fr.cemagref.observation.observers.jfreechart.TemporalSerieChart> <graphType>LINE</graphType> <title>Mean age at first reproduction
for male</title> <xAxisLabel>Time (season)</xAxisLabel> <yAxisLabel>age (year)</yAxisLabel> <variableName>getMeanAgeOfFirstReprodutionForMale</variableName>
</fr.cemagref.observation.observers.jfreechart.TemporalSerieChart> <fr.cemagref.observation.observers.jfreechart.TemporalSerieChart>
<graphType>LINE</graphType> <title>Statistic for male spawners age</title> <xAxisLabel>Time (season)</xAxisLabel> <yAxisLabel></yAxisLabel>
<variableName>computeMaleSpawnerForFirstTimeSummaryStatistic</variableName> </fr.cemagref.observation.observers.jfreechart.TemporalSerieChart>
<fr.cemagref.observation.observers.jfreechart.TemporalSerieChart> <graphType>LINE</graphType> <title>Statistic for female
spawners age</title> <xAxisLabel>Time (season)</xAxisLabel> <yAxisLabel></yAxisLabel> <variableName>computeFemaleSpawnerForFirstTimeSummaryStatistic</variableName>
</fr.cemagref.observation.observers.jfreechart.TemporalSerieChart> <fr.cemagref.observation.observers.jfreechart.TemporalSerieChart>
<graphType>LINE</graphType> <title>Mean length at first reproduction for female</title> <xAxisLabel>Time (season)</xAxisLabel>
<yAxisLabel>length (cm)</yAxisLabel> <variableName>getMeanLengthOfFirstReprodutionForFemale</variableName> </fr.cemagref.observation.observers.jfreechart.TemporalSerieChart>
<fr.cemagref.observation.observers.jfreechart.TemporalSerieChart> <graphType>LINE</graphType> <title>Mean length at first
reproduction for male</title> <xAxisLabel>Time (season)</xAxisLabel> <yAxisLabel>length (cm)</yAxisLabel> <variableName>getMeanLengthOfFirstReprodutionForMale</variableName>
</fr.cemagref.observation.observers.jfreechart.TemporalSerieChart> </observers> </fr.cemagref.observation.kernel.ObservablesHandler>
</entry> <entry> <java-class>environment.RiverBasin</java-class> <fr.cemagref.observation.kernel.ObservablesHandler> <observers>
<miscellaneous.TemporalSerieChartForBasin> <graphType>LINE</graphType> <title>Number of juveniles</title> <xAxisLabel>Time
(season)</xAxisLabel> <yAxisLabel>number of juveniles</yAxisLabel> <variableName>getJuvenileNumber</variableName> </miscellaneous.TemporalSerieChartForBasin>
<miscellaneous.TemporalSerieChartForBasin> <graphType>LINE</graphType> <title>% Autochtone</title> <xAxisLabel>Time (season)</xAxisLabel>
<yAxisLabel>% Autochtone</yAxisLabel> <variableName>getLastPercentageOfAutochtone</variableName> </miscellaneous.TemporalSerieChartForBasin>
</observers> </fr.cemagref.observation.kernel.ObservablesHandler> </entry> -->
<entry>
<java-class>species.DiadromousFishGroup</java-class>
<fr.cemagref.observation.kernel.ObservablesHandler>
<observers>
<fr.cemagref.observation.observers.jfreechart.TemporalSerieChart>
<graphType>LINE</graphType>
<title>Number of colonized
basins
</title>
<xAxisLabel>Time (season)</xAxisLabel>
<yAxisLabel>number of basins</yAxisLabel>
<variableName>getNbColonizedBasins</variableName>
</fr.cemagref.observation.observers.jfreechart.TemporalSerieChart>
<fr.cemagref.observation.observers.jfreechart.TemporalSerieChart>
<graphType>LINE</graphType>
<title>Total Abundance</title>
<xAxisLabel>Time (season)</xAxisLabel>
<yAxisLabel>number of fishes</yAxisLabel>
<variableName>getFishEffective</variableName>
</fr.cemagref.observation.observers.jfreechart.TemporalSerieChart>
<fr.cemagref.observation.observers.jfreechart.TemporalSerieChart>
<graphType>LINE</graphType>
<title>Abundance of spawners</title>
<xAxisLabel>Time (season)</xAxisLabel>
<yAxisLabel>number
of fishes
</yAxisLabel>
<variableName>getSpawnerEffective</variableName>
</fr.cemagref.observation.observers.jfreechart.TemporalSerieChart>
<fr.cemagref.observation.observers.jfreechart.TemporalSerieChart>
<graphType>LINE</graphType>
<title>Abundance of male spawners</title>
<xAxisLabel>Time (season)</xAxisLabel>
<yAxisLabel>number of fishes</yAxisLabel>
<variableName>getMaleSpawnerEffective</variableName>
</fr.cemagref.observation.observers.jfreechart.TemporalSerieChart>
<fr.cemagref.observation.observers.jfreechart.TemporalSerieChart>
<graphType>LINE</graphType>
<title>Abundance of female spawners</title>
<xAxisLabel>Time (season)</xAxisLabel>
<yAxisLabel>number
of fishes
</yAxisLabel>
<variableName>getFemaleSpawnerEffective</variableName>
</fr.cemagref.observation.observers.jfreechart.TemporalSerieChart>
<miscellaneous.TemporalRangeSerieChart>
<title>Range distribution</title>
<xAxisLabel>Time (season)</xAxisLabel>
<yAxisLabel>latitude</yAxisLabel>
<variableName>getRangeDistributionWithLat</variableName>
</miscellaneous.TemporalRangeSerieChart>
<fr.cemagref.observation.observers.jfreechart.TemporalSerieChart>
<graphType>LINE</graphType>
<title>Mean age at first reproduction for female</title>
<xAxisLabel>Time (season)</xAxisLabel>
<yAxisLabel>age (year)</yAxisLabel>
<variableName>getMeanAgeOfFirstReprodutionForFemale</variableName>
</fr.cemagref.observation.observers.jfreechart.TemporalSerieChart>
<fr.cemagref.observation.observers.jfreechart.TemporalSerieChart>
<graphType>LINE</graphType>
<title>Mean age at first reproduction
for male
</title>
<xAxisLabel>Time (season)</xAxisLabel>
<yAxisLabel>age (year)</yAxisLabel>
<variableName>getMeanAgeOfFirstReprodutionForMale</variableName>
</fr.cemagref.observation.observers.jfreechart.TemporalSerieChart>
<fr.cemagref.observation.observers.jfreechart.TemporalSerieChart>
<graphType>LINE</graphType>
<title>Statistic for male spawners age</title>
<xAxisLabel>Time (season)</xAxisLabel>
<yAxisLabel></yAxisLabel>
<variableName>computeMaleSpawnerForFirstTimeSummaryStatistic</variableName>
</fr.cemagref.observation.observers.jfreechart.TemporalSerieChart>
<fr.cemagref.observation.observers.jfreechart.TemporalSerieChart>
<graphType>LINE</graphType>
<title>Statistic for female
spawners age
</title>
<xAxisLabel>Time (season)</xAxisLabel>
<yAxisLabel></yAxisLabel>
<variableName>computeFemaleSpawnerForFirstTimeSummaryStatistic</variableName>
</fr.cemagref.observation.observers.jfreechart.TemporalSerieChart>
<fr.cemagref.observation.observers.jfreechart.TemporalSerieChart>
<graphType>LINE</graphType>
<title>Mean length at first reproduction for female</title>
<xAxisLabel>Time (season)</xAxisLabel>
<yAxisLabel>length (cm)</yAxisLabel>
<variableName>getMeanLengthOfFirstReprodutionForFemale</variableName>
</fr.cemagref.observation.observers.jfreechart.TemporalSerieChart>
<fr.cemagref.observation.observers.jfreechart.TemporalSerieChart>
<graphType>LINE</graphType>
<title>Mean length at first
reproduction for male
</title>
<xAxisLabel>Time (season)</xAxisLabel>
<yAxisLabel>length (cm)</yAxisLabel>
<variableName>getMeanLengthOfFirstReprodutionForMale</variableName>
</fr.cemagref.observation.observers.jfreechart.TemporalSerieChart>
</observers>
</fr.cemagref.observation.kernel.ObservablesHandler>
</entry>
<entry>
<java-class>environment.RiverBasin</java-class>
<fr.cemagref.observation.kernel.ObservablesHandler>
<observers>
<miscellaneous.TemporalSerieChartForBasin>
<graphType>LINE</graphType>
<title>Number of juveniles</title>
<xAxisLabel>Time
(season)
</xAxisLabel>
<yAxisLabel>number of juveniles</yAxisLabel>
<variableName>getJuvenileNumber</variableName>
</miscellaneous.TemporalSerieChartForBasin>
<miscellaneous.TemporalSerieChartForBasin>
<graphType>LINE</graphType>
<title>% Autochtone</title>
<xAxisLabel>Time (season)</xAxisLabel>
<yAxisLabel>% Autochtone</yAxisLabel>
<variableName>getLastPercentageOfAutochtone</variableName>
</miscellaneous.TemporalSerieChartForBasin>
</observers>
</fr.cemagref.observation.kernel.ObservablesHandler>
</entry>
</hashtable>
\ No newline at end of file
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