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SimAquaLife
GR3D
Commits
957c9e54
Commit
957c9e54
authored
Jul 01, 2020
by
Lambert Patrick
Browse files
with right output path
parent
562f7472
Changes
2
Hide whitespace changes
Inline
Side-by-side
src/main/java/species/WriteNutrientExportFluxes.java
View file @
957c9e54
...
...
@@ -8,7 +8,6 @@ import java.util.ArrayList;
import
java.util.Collections
;
import
java.util.List
;
import
java.util.Map
;
import
java.util.Map.Entry
;
import
com.thoughtworks.xstream.XStream
;
import
com.thoughtworks.xstream.io.xml.DomDriver
;
...
...
@@ -17,42 +16,43 @@ import fr.cemagref.simaqualife.kernel.processes.AquaNismsGroupProcess;
public
class
WriteNutrientExportFluxes
extends
AquaNismsGroupProcess
<
DiadromousFish
,
DiadromousFishGroup
>
{
private
String
fileName
=
"nutrientExportFluxes"
;
private
String
fileName
=
"nutrientExportFluxes"
;
public
static
void
main
(
String
[]
args
)
{
System
.
out
.
println
((
new
XStream
(
new
DomDriver
()))
.
toXML
(
new
WriteNutrientExportFluxes
()));
System
.
out
.
println
((
new
XStream
(
new
DomDriver
())).
toXML
(
new
WriteNutrientExportFluxes
()));
}
@Override
public
void
doProcess
(
DiadromousFishGroup
group
)
{
BufferedWriter
bW
;
String
outputPath
=
"data/output/"
;
String
sep
=
";"
;
String
outputPath
=
group
.
getOutputPath
()
;
String
sep
=
";"
;
new
File
(
outputPath
+
fileName
).
getParentFile
().
mkdirs
();
try
{
bW
=
new
BufferedWriter
(
new
FileWriter
(
new
File
(
outputPath
+
fileName
+
group
.
getSimulationId
()
+
".csv"
)));
bW
=
new
BufferedWriter
(
new
FileWriter
(
new
File
(
outputPath
+
fileName
+
group
.
getSimulationId
()
+
".csv"
)));
bW
.
write
(
"year"
+
sep
+
"nutrient"
+
sep
+
"originBasin"
+
sep
+
"value"
+
"\n"
);
bW
.
write
(
"year"
+
sep
+
"nutrient"
+
sep
+
"originBasin"
+
sep
+
"value"
+
"\n"
);
Map
<
Long
,
Map
<
String
,
Map
<
String
,
Double
>>>
fluxesCollection
=
group
.
getNutrientRoutine
().
getNutrientExportFluxesCollection
().
getExportFluxesCollection
();
Map
<
Long
,
Map
<
String
,
Map
<
String
,
Double
>>>
fluxesCollection
=
group
.
getNutrientRoutine
()
.
getNutrientExportFluxesCollection
().
getExportFluxesCollection
();
// to iterate on sorted years
List
<
Long
>
years
=
new
ArrayList
<
Long
>(
fluxesCollection
.
keySet
());
List
<
Long
>
years
=
new
ArrayList
<
Long
>(
fluxesCollection
.
keySet
());
Collections
.
sort
(
years
);
for
(
long
year
:
years
)
{
for
(
long
year
:
years
)
{
if
(
year
>=
group
.
getMinYearToWrite
())
{
for
(
String
nutrient
:
group
.
getNutrientRoutine
().
getNutrientsOfInterest
())
{
for
(
String
originBasinName
:
group
.
getEnvironment
().
getRiverBasinNames
())
{
bW
.
write
(
year
+
sep
+
nutrient
+
sep
+
originBasinName
);
bW
.
write
(
sep
+
fluxesCollection
.
get
(
year
).
get
(
nutrient
).
get
(
originBasinName
)
+
'\n'
);
bW
.
write
(
year
+
sep
+
nutrient
+
sep
+
originBasinName
);
bW
.
write
(
sep
+
fluxesCollection
.
get
(
year
).
get
(
nutrient
).
get
(
originBasinName
)
+
'\n'
);
}
}
...
...
src/main/java/species/WriteNutrientImportFluxes.java
View file @
957c9e54
...
...
@@ -8,7 +8,6 @@ import java.util.ArrayList;
import
java.util.Collections
;
import
java.util.List
;
import
java.util.Map
;
import
java.util.Map.Entry
;
import
com.thoughtworks.xstream.XStream
;
import
com.thoughtworks.xstream.io.xml.DomDriver
;
...
...
@@ -17,57 +16,55 @@ import fr.cemagref.simaqualife.kernel.processes.AquaNismsGroupProcess;
public
class
WriteNutrientImportFluxes
extends
AquaNismsGroupProcess
<
DiadromousFish
,
DiadromousFishGroup
>
{
private
String
fileName
=
"fluxes"
;
private
String
fileName
=
"fluxes"
;
public
static
void
main
(
String
[]
args
)
{
System
.
out
.
println
((
new
XStream
(
new
DomDriver
()))
.
toXML
(
new
WriteNutrientImportFluxes
()));
System
.
out
.
println
((
new
XStream
(
new
DomDriver
())).
toXML
(
new
WriteNutrientImportFluxes
()));
}
@Override
public
void
doProcess
(
DiadromousFishGroup
group
)
{
BufferedWriter
bW
;
String
outputPath
=
"data/output/"
;
String
sep
=
";"
;
String
outputPath
=
group
.
getOutputPath
()
;
String
sep
=
";"
;
new
File
(
outputPath
+
fileName
).
getParentFile
().
mkdirs
();
try
{
bW
=
new
BufferedWriter
(
new
FileWriter
(
new
File
(
outputPath
+
fileName
+
group
.
getSimulationId
()
+
".csv"
)));
bW
=
new
BufferedWriter
(
new
FileWriter
(
new
File
(
outputPath
+
fileName
+
group
.
getSimulationId
()
+
".csv"
)));
bW
.
write
(
"year"
+
sep
+
"nutrient"
+
sep
+
"originBasin"
);
bW
.
write
(
"year"
+
sep
+
"nutrient"
+
sep
+
"originBasin"
);
for
(
String
birthBasinName
:
group
.
getEnvironment
().
getRiverBasinNames
())
{
bW
.
write
(
sep
+
birthBasinName
);
// write each basin name in the file
bW
.
write
(
sep
+
birthBasinName
);
// write each basin name in the file
}
bW
.
write
(
"\n"
);
Map
<
Long
,
Map
<
String
,
Map
<
String
,
Map
<
String
,
Double
>>>>
fluxesCollection
=
group
.
getNutrientRoutine
().
getNutrientImportFluxesCollection
().
getImportFluxesCollection
();
Map
<
Long
,
Map
<
String
,
Map
<
String
,
Map
<
String
,
Double
>>>>
fluxesCollection
=
group
.
getNutrientRoutine
()
.
getNutrientImportFluxesCollection
().
getImportFluxesCollection
();
// to iterate on sorted years
List
<
Long
>
years
=
new
ArrayList
<
Long
>(
fluxesCollection
.
keySet
());
List
<
Long
>
years
=
new
ArrayList
<
Long
>(
fluxesCollection
.
keySet
());
Collections
.
sort
(
years
);
for
(
long
year
:
years
)
{
for
(
long
year
:
years
)
{
if
(
year
>=
group
.
getMinYearToWrite
())
{
Map
<
String
,
Map
<
String
,
Map
<
String
,
Double
>>>
yearsMap
=
fluxesCollection
.
get
(
year
);
Map
<
String
,
Map
<
String
,
Map
<
String
,
Double
>>>
yearsMap
=
fluxesCollection
.
get
(
year
);
for
(
String
nutrient
:
group
.
getNutrientRoutine
().
getNutrientsOfInterest
())
{
Map
<
String
,
Map
<
String
,
Double
>>
originsMap
=
yearsMap
.
get
(
nutrient
);
Map
<
String
,
Map
<
String
,
Double
>>
originsMap
=
yearsMap
.
get
(
nutrient
);
for
(
String
originBasinName
:
group
.
getEnvironment
().
getRiverBasinNames
())
{
bW
.
write
(
year
+
sep
+
nutrient
+
sep
+
originBasinName
);
Map
<
String
,
Double
>
destinationsMap
=
originsMap
.
get
(
originBasinName
);
bW
.
write
(
year
+
sep
+
nutrient
+
sep
+
originBasinName
);
Map
<
String
,
Double
>
destinationsMap
=
originsMap
.
get
(
originBasinName
);
for
(
String
destinationBasinName
:
group
.
getEnvironment
().
getRiverBasinNames
())
{
Double
aFlux
=
destinationsMap
.
get
(
destinationBasinName
);
bW
.
write
(
sep
+
aFlux
);
Double
aFlux
=
destinationsMap
.
get
(
destinationBasinName
);
bW
.
write
(
sep
+
aFlux
);
}
bW
.
write
(
"\n"
);
...
...
@@ -83,5 +80,4 @@ public class WriteNutrientImportFluxes extends AquaNismsGroupProcess<DiadromousF
}
}
}
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