exploration of calibration result

There a pb with male length

data/input/fishTryRealBV_CC.xml

@@ -259,8 +259,8 @@
 					<tempMinGrow>3.0</tempMinGrow>
 					<tempMaxGrow>26.0</tempMaxGrow>
 					<tempOptGrow>17.0</tempOptGrow>
-					<kOptForFemale>0.5363472</kOptForFemale>
-					<kOptForMale>0.3900707</kOptForMale>
+					<kOptForFemale>0.20323011454056628</kOptForFemale>
+					<kOptForMale>0.3004992503785338</kOptForMale>
 					<sigmaDeltaLVonBert>0.2</sigmaDeltaLVonBert>
 				</species.Grow>
 
@@ -309,7 +309,7 @@
 				<species.ReproduceAndSurviveAfterReproductionWithDiagnose>
 					<synchronisationMode>ASYNCHRONOUS</synchronisationMode>
 					<reproductionSeason>SPRING</reproductionSeason>
-					<tempMinRep>9.846984</tempMinRep>
+					<tempMinRep>10.443039492695249</tempMinRep>
 					<tempMaxRep>26.0</tempMaxRep>
 					<tempOptRep>20.0</tempOptRep>
 					<eta>2.4</eta>

data/input/obsTryReal.xml

@@ -46,6 +46,23 @@
 					<variableName>getMeanLengthOfFemaleSpawnerForFirstTime</variableName>
 				</fr.cemagref.observation.observers.jfreechart.TemporalSerieChart>
 
+				<fr.cemagref.observation.observers.jfreechart.TemporalSerieChart>
+					<graphType>LINE</graphType>
+					<title>Mean age of male spawners</title>
+					<xAxisLabel>Time (season)</xAxisLabel>
+					<yAxisLabel>age (year)</yAxisLabel>
+					<variableName>getMeanLengthOfMaleSpawnerForFirstTime</variableName>
+				</fr.cemagref.observation.observers.jfreechart.TemporalSerieChart>
+
+
+				<fr.cemagref.observation.observers.jfreechart.TemporalSerieChart>
+					<graphType>LINE</graphType>
+					<title>Statistic for male spawners age</title>
+					<xAxisLabel>Time (season)</xAxisLabel>
+					<yAxisLabel>age (year)</yAxisLabel>
+					<variableName>computeMaleSpawnerForFirstTimeSummaryStatistic</variableName>
+				</fr.cemagref.observation.observers.jfreechart.TemporalSerieChart>
+
 			</observers>
 		</fr.cemagref.observation.kernel.ObservablesHandler>
 	</entry>

src/main/java/species/Calibrate.java

@@ -112,7 +112,8 @@ public class Calibrate  {
 		cma.println("Best function value " + cma.getBestFunctionValue() + " at evaluation " + cma.getBestEvaluationNumber());
 
 		cma.println("best par: "+ Arrays.toString(fitfun.x2par(cma.getBestX())));
-		cma.println("best sol: "+ Arrays.toString(fitfun.x2par(cma.getBestSolution().getX())));
+
+		System.out.println("\n"+fitfun.valueOf(cma.getBestX()));
 		System.out.println();
 		for (int i=0; i < pop.length; i++) {
 			System.out.println(Arrays.toString(fitfun.x2par((pop[i]))));
@@ -153,7 +154,6 @@ class GR3DObjeciveFunction  implements   IObjectiveFunction {
 	}
 
 
-
 	@Override
 	public double valueOf(double[] x) {
 		// x[0] tempMinRep
@@ -161,7 +161,6 @@ class GR3DObjeciveFunction  implements   IObjectiveFunction {
 		// x[2] kOptMale
 
 		double[] par = x2par(x); // in natural unit
-		
 		try {
 			pilot.load();
 
@@ -192,6 +191,8 @@ class GR3DObjeciveFunction  implements   IObjectiveFunction {
 			maleLengthPenalty = (double) 	ReflectUtils.getValueFromPath(pilot, "aquaticWorld.aquaNismsGroupsList.0.computeMaleSpawnerForFirstTimeSummaryStatistic");
 			//System.out.println("maleLengthPenalty: "+maleLengthPenalty);
 
+			System.out.println("likelihood: "+ likelihood+ " femaleLengthPenalty: "+femaleLengthPenalty+ " maleLengthPenalty: "+maleLengthPenalty);
+			
 		} catch (NoSuchFieldException | IllegalArgumentException | IllegalAccessException | InvocationTargetException e) {
 			// TODO Auto-generated catch block
 			e.printStackTrace();

src/main/java/species/DiadromousFishGroup.java

@@ -660,6 +660,7 @@ public class DiadromousFishGroup extends AquaNismsGroup< DiadromousFish, BasinNe
 				sum += val * val;
 			}
 		}
+		System.out.println("sum female: " + sum);
 		return sum;
 	}
 
@@ -691,6 +692,7 @@ public class DiadromousFishGroup extends AquaNismsGroup< DiadromousFish, BasinNe
 				sum += val * val;
 			}
 		}
+		System.out.println("sum male: " + sum);
 		return sum;
 	}
 
@@ -698,6 +700,20 @@ public class DiadromousFishGroup extends AquaNismsGroup< DiadromousFish, BasinNe
 	public double computeMaleSpawnerForFirstTimeSummaryStatistic() {
 		return computeMaleSpawnerForFirstTimeSummaryStatisticWithTarget(4.5); 
 	}
+	
+	@Observable(description="mean length for male spawners For First Time")
+	public double getMeanLengthOfMaleSpawnerForFirstTime() {
+		double sum = 0;
+		double nb =0;
+		for (RiverBasin riverBasin : getEnvironment().getRiverBasins()) {
+			if (riverBasin.getSpawnersForFirstTimeMeanAges(Gender.MALE).getMeanWithoutZero() > 0.) {
+				nb ++;
+				sum += riverBasin.getSpawnersForFirstTimeMeanAges(Gender.MALE).getMeanWithoutZero() ;
+			}
+		}
+		return sum/nb;
+	}
+
 
 	@Observable(description = "Likelihood Summary stat")
 	public double computeLikelihood() {