Change XMl for growth calibration

d6fc7b15 · Poulet Camille · 10262818 · d6fc7b15
Commit d6fc7b15 authored 4 years ago by Poulet Camille
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--- a/exploration/GR3D_Rdescription/GR3D_NEA_XML_parameters.R
+++ b/exploration/GR3D_Rdescription/GR3D_NEA_XML_parameters.R
 library(XML)

 #read the XML file to upload the set of parameters included in GR3D-US
-fishXML <- xmlToList(xmlParse("../../data/input/northeastamerica/fishRIOBasin_Sapidissima.xml"))
+fishXML <- xmlToList(xmlParse("../../data/input/northeastamerica/fishRIOBasin_Sapidissima_Old.xml"))

 #Upload parameters linked to reproduction
-reproducePar = data.frame(t(unlist(fishXML[[1]][["processes"]][["processesEachStep"]][["species.ReproduceAndSurviveAfterReproductionWithDiagnose"]]))) %>% 
+reproducePar = data.frame(t(unlist(fishXML[[1]][["processes"]][["processesEachStep"]][["species.ReproduceWithDiagnose"]]))) %>% 
  select(-c(synchronisationMode, reproductionSeason, proportionOfFemaleAtBirth,
            sigmaRecruitment, maxNumberOfSuperIndividualPerReproduction, withDiagnose,
            displayFluxesOnConsole)) %>%