Commit d9fa54db authored by Poulet Camille's avatar Poulet Camille
Browse files

Correction in XML file for Survival

Replace values for juvenile survival (TminRep, ToptRep, TmaxRep) by
temperature coming from Q5%, mean and Q95% of the spring river
temperature recorded in river basin were there was presence.

Replace values for spawner survival before reproduction  (TminSurv,
ToptSurv, TmaxSurv) by temperature coming from Q5%, mean and Q95% of the
spring and summe river temperature recorded in river basin were there
was presence.

Replace values for spawner survival after reproduction   by coefficent
from the new optimisation (logit2 - function)
parent 074ce266
......@@ -269,9 +269,9 @@
<species.Survive>
<synchronisationMode>ASYNCHRONOUS</synchronisationMode>
<tempMinSurvivalSpawnerInRiv>5.1</tempMinSurvivalSpawnerInRiv>
<tempOptSurvivalSpawnerInRiv>16.6</tempOptSurvivalSpawnerInRiv>
<tempMaxSurvivalSpawnerInRiv>24.3</tempMaxSurvivalSpawnerInRiv>
<tempMinSurvivalSpawnerInRiv>5.4</tempMinSurvivalSpawnerInRiv>
<tempOptSurvivalSpawnerInRiv>16.7</tempOptSurvivalSpawnerInRiv>
<tempMaxSurvivalSpawnerInRiv>27.5</tempMaxSurvivalSpawnerInRiv>
<survivalProbOptSpawnerInRiv>1.0</survivalProbOptSpawnerInRiv>
<!--<mortalityRateInRiver>0.4</mortalityRateInRiver> -->
<mortalityRateInSea>0.4</mortalityRateInSea>
......@@ -296,9 +296,9 @@
<species.ReproduceWithDiagnose>
<synchronisationMode>ASYNCHRONOUS</synchronisationMode>
<reproductionSeason>SPRING</reproductionSeason>
<tempMinRep>10</tempMinRep>
<tempOptRep>17</tempOptRep>
<tempMaxRep>30</tempMaxRep>
<tempMinRep>5.1</tempMinRep>
<tempOptRep>13.5</tempOptRep>
<tempMaxRep>24.3</tempMaxRep>
<Soffset>-1.0</Soffset>
<eta>2.4</eta>
<ratioS95__S50>1.9</ratioS95__S50>
......@@ -318,10 +318,10 @@
<species.SurviveAfterReproduction>
<synchronisationMode>ASYNCHRONOUS</synchronisationMode>
<afterReproductionSeason>SUMMER</afterReproductionSeason>
<maximalSurvivalRate>0.1</maximalSurvivalRate>
<maximalSurvivalRate>0.18</maximalSurvivalRate>
<temperatureEffectSurvivalAfterReproduction class="temperatureEffect.LogitEffect">
<Tref>19.9</Tref>
<alpha>-.1</alpha>
<alpha>-0.58</alpha>
</temperatureEffectSurvivalAfterReproduction>
<!-- <temperatureEffectSurvivalAfterReproduction -->
<!-- class="temperatureEffect.NoEffect"> -->
......
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