Shape affiché mais pas dans la bonne fenêtre...

.classpath

 <?xml version="1.0" encoding="UTF-8"?>
 <classpath>
-	<classpathentry kind="con" path="org.eclipse.jdt.launching.JRE_CONTAINER/org.eclipse.jdt.internal.debug.ui.launcher.StandardVMType/JavaSE-1.6">
+	<classpathentry kind="con" path="org.eclipse.jdt.launching.JRE_CONTAINER/org.eclipse.jdt.internal.debug.ui.launcher.StandardVMType/JavaSE-1.8">
 		<attributes>
 			<attribute name="maven.pomderived" value="true"/>
 		</attributes>

.settings/org.eclipse.jdt.core.prefs

 eclipse.preferences.version=1
 org.eclipse.jdt.core.compiler.codegen.inlineJsrBytecode=enabled
 org.eclipse.jdt.core.compiler.codegen.methodParameters=do not generate
-org.eclipse.jdt.core.compiler.codegen.targetPlatform=1.6
+org.eclipse.jdt.core.compiler.codegen.targetPlatform=1.8
 org.eclipse.jdt.core.compiler.codegen.unusedLocal=preserve
-org.eclipse.jdt.core.compiler.compliance=1.6
+org.eclipse.jdt.core.compiler.compliance=1.8
 org.eclipse.jdt.core.compiler.debug.lineNumber=generate
 org.eclipse.jdt.core.compiler.debug.localVariable=generate
 org.eclipse.jdt.core.compiler.debug.sourceFile=generate
 org.eclipse.jdt.core.compiler.problem.assertIdentifier=error
 org.eclipse.jdt.core.compiler.problem.enumIdentifier=error
 org.eclipse.jdt.core.compiler.problem.forbiddenReference=warning
-org.eclipse.jdt.core.compiler.source=1.6
+org.eclipse.jdt.core.compiler.source=1.8

data/input/observersCharts.xml

@@ -26,6 +26,7 @@
 						<blue>255</blue>
 						<alpha>255</alpha>
 					</shapeColor>
+					<!--shape>//data//input//shape//hsi_BROAUTOMNE507.shp</shape-->
                                 </pikelake.environment.Movement2DWithinShapeObserver>
 			</observers>
 		</fr.cemagref.observation.kernel.ObservablesHandler>

data/input/shape/complet/TRE19_BDTopo_513m_ok.prj

+PROJCS["RGF93_Lambert_93",GEOGCS["GCS_RGF_1993",DATUM["D_RGF_1993",SPHEROID["GRS_1980",6378137.0,298.257222101]],PRIMEM["Greenwich",0.0],UNIT["Degree",0.0174532925199433]],PROJECTION["Lambert_Conformal_Conic"],PARAMETER["False_Easting",700000.0],PARAMETER["False_Northing",6600000.0],PARAMETER["Central_Meridian",3.0],PARAMETER["Standard_Parallel_1",44.0],PARAMETER["Standard_Parallel_2",49.0],PARAMETER["Latitude_Of_Origin",46.5],UNIT["Meter",1.0]]
\ No newline at end of file

data/input/shape/complet/TRE19_BDTopo_513m_ok.shp.xml

+<?xml version="1.0"?>
+<!--<!DOCTYPE metadata SYSTEM "http://www.esri.com/metadata/esriprof80.dtd">-->
+<metadata xml:lang="fr"><Esri><CreaDate>20140210</CreaDate><CreaTime>17093400</CreaTime><SyncOnce>FALSE</SyncOnce><SyncDate>20110810</SyncDate><SyncTime>17220800</SyncTime><ModDate>20110810</ModDate><ModTime>17220800</ModTime><DataProperties><lineage><Process ToolSource="C:\Program Files\ArcGIS\ArcToolbox\Toolboxes\Data Management Tools.tbx\CopyFeatures" Date="20110727" Time="152227">CopyFeatures X:\SIGHYAX\Eau_Hydrographie\hydrologie\france\Plan_deau\BD-Topo-ASSEMBLAGE_cemagref\LacTopoAG_perm_int.shp "X:\SIGHYAX\Eau_Hydrographie\hydrologie\france\Plan_deau\BD-Topo-ASSEMBLAGE_cemagref\New Personal Geodatabase.mdb\LacTopoAG_perm_int" # 0 0 0</Process><Process ToolSource="C:\Program Files\ArcGIS\ArcToolbox\Toolboxes\Data Management Tools.tbx\CopyFeatures" Date="20110727" Time="154539">CopyFeatures X:\SIGHYAX\Eau_Hydrographie\hydrologie\france\Plan_deau\BD-Topo-ASSEMBLAGE_cemagref\LacTopo.mdb\LacTopoAG_perm_int "X:\SIGHYAX\Eau_Hydrographie\hydrologie\france\Plan_deau\BD-Topo-ASSEMBLAGE_cemagref\New Folder (2)\LacTopoAG_perm_int.shp" # 0 0 0</Process><Process ToolSource="C:\Program Files\ArcGIS\ArcToolbox\Toolboxes\Data Management Tools.tbx\Dissolve" Date="20110810" Time="172345">Dissolve plandoTopo X:\SIGHYAX\Eau_Hydrographie\hydrologie\france\Plan_deau\BD-Topo-ASSEMBLAGE_cemagref\plandoTopo_Dissolve.shp Code_Lac # MULTI_PART DISSOLVE_LINES</Process></lineage><itemProps><itemLocation><linkage Sync="TRUE">file://\\dataperso\perso\Samuel.Westrelin\HYAX.mod\Bariousses\FromNat\TRE19_BDTopo_513m_ok</linkage><protocol Sync="TRUE">Local Area Network</protocol></itemLocation></itemProps><copyHistory><copy source="D:\Projets_SIG\Alti_Bariousses\TRE19_BDTopo_513m_ok" dest="\\dataperso\perso\Samuel.Westrelin\HYAX.mod\Bariousses\FromNat\TRE19_BDTopo_513m_ok" date="20140210" time="17093400"></copy></copyHistory></DataProperties></Esri><idinfo><native Sync="TRUE">Microsoft Windows XP Version 5.1 (Build 2600) Service Pack 3; ESRI ArcCatalog 9.3.1.3000</native><descript><langdata Sync="TRUE">fr</langdata><abstract>REQUIRED: A brief narrative summary of the data set.</abstract><purpose>REQUIRED: A summary of the intentions with which the data set was developed.</purpose></descript><citation><citeinfo><origin>REQUIRED: The name of an organization or individual that developed the data set.</origin><pubdate>REQUIRED: The date when the data set is published or otherwise made available for release.</pubdate><title Sync="TRUE">plandoTopo_Dissolve</title><ftname Sync="TRUE">plandoTopo_Dissolve</ftname><geoform Sync="TRUE">vector digital data</geoform><onlink Sync="TRUE">\\datasig\data_hyax\SIGHYAX\Eau_Hydrographie\hydrologie\france\Plan_deau\BD-Topo-ASSEMBLAGE_cemagref\plandoTopo_Dissolve.shp</onlink></citeinfo></citation><timeperd><current>REQUIRED: The basis on which the time period of content information is determined.</current><timeinfo><sngdate><caldate>REQUIRED: The year (and optionally month, or month and day) for which the data set corresponds to the ground.</caldate></sngdate></timeinfo></timeperd><status><progress>REQUIRED: The state of the data set.</progress><update>REQUIRED: The frequency with which changes and additions are made to the data set after the initial data set is completed.</update></status><spdom><bounding><westbc Sync="TRUE">REQUIRED: Western-most coordinate of the limit of coverage expressed in longitude.</westbc><eastbc Sync="TRUE">REQUIRED: Eastern-most coordinate of the limit of coverage expressed in longitude.</eastbc><northbc Sync="TRUE">REQUIRED: Northern-most coordinate of the limit of coverage expressed in latitude.</northbc><southbc Sync="TRUE">REQUIRED: Southern-most coordinate of the limit of coverage expressed in latitude.</southbc></bounding></spdom><keywords><theme><themekt>REQUIRED: Reference to a formally registered thesaurus or a similar authoritative source of theme keywords.</themekt><themekey>REQUIRED: Common-use word or phrase used to describe the subject of the data set.</themekey></theme></keywords><accconst>REQUIRED: Restrictions and legal prerequisites for accessing the data set.</accconst><useconst>REQUIRED: Restrictions and legal prerequisites for using the data set after access is granted.</useconst><natvform Sync="TRUE">Shapefile</natvform></idinfo><dataIdInfo><envirDesc Sync="TRUE">Microsoft Windows XP Version 5.1 (Build 2600) Service Pack 3; ESRI ArcCatalog 9.3.1.3000</envirDesc><dataLang><languageCode Sync="TRUE" value="fr"></languageCode></dataLang><idCitation><resTitle Sync="TRUE">plandoTopo_Dissolve</resTitle><presForm><PresFormCd Sync="TRUE" value="005"></PresFormCd></presForm></idCitation><spatRpType><SpatRepTypCd Sync="TRUE" value="001"></SpatRepTypCd></spatRpType></dataIdInfo><metainfo><langmeta Sync="TRUE">fr</langmeta><metstdn Sync="TRUE">FGDC Content Standards for Digital Geospatial Metadata</metstdn><metstdv Sync="TRUE">FGDC-STD-001-1998</metstdv><mettc Sync="TRUE">local time</mettc><metc><cntinfo><cntorgp><cntper>REQUIRED: The person responsible for the metadata information.</cntper><cntorg>REQUIRED: The organization responsible for the metadata information.</cntorg></cntorgp><cntaddr><addrtype>REQUIRED: The mailing and/or physical address for the organization or individual.</addrtype><city>REQUIRED: The city of the address.</city><state>REQUIRED: The state or province of the address.</state><postal>REQUIRED: The ZIP or other postal code of the address.</postal></cntaddr><cntvoice>REQUIRED: The telephone number by which individuals can speak to the organization or individual.</cntvoice></cntinfo></metc><metd Sync="TRUE">20110810</metd><metextns><onlink Sync="TRUE">http://www.esri.com/metadata/esriprof80.html</onlink><metprof Sync="TRUE">ESRI Metadata Profile</metprof></metextns></metainfo><mdLang><languageCode Sync="TRUE" value="fr"></languageCode></mdLang><mdStanName Sync="TRUE">ISO 19115 Geographic Information - Metadata</mdStanName><mdStanVer Sync="TRUE">DIS_ESRI1.0</mdStanVer><mdChar><CharSetCd Sync="TRUE" value="004"></CharSetCd></mdChar><mdHrLv><ScopeCd Sync="TRUE" value="005"></ScopeCd></mdHrLv><mdHrLvName Sync="TRUE">dataset</mdHrLvName><distinfo><resdesc Sync="TRUE">Downloadable Data</resdesc><stdorder><digform><digtinfo><transize Sync="TRUE">0.000</transize><dssize Sync="TRUE">0.000</dssize></digtinfo></digform></stdorder></distinfo><distInfo><distributor><distorTran><onLineSrc><orDesc Sync="TRUE">002</orDesc><linkage Sync="TRUE">file://\\datasig\data_hyax\SIGHYAX\Eau_Hydrographie\hydrologie\france\Plan_deau\BD-Topo-ASSEMBLAGE_cemagref\plandoTopo_Dissolve.shp</linkage><protocol Sync="TRUE">Local Area Network</protocol></onLineSrc><transSize Sync="TRUE">0.000</transSize></distorTran><distorFormat><formatName Sync="TRUE">Shapefile</formatName></distorFormat></distributor></distInfo><spdoinfo><direct Sync="TRUE">Vector</direct><ptvctinf><esriterm Name="plandoTopo_Dissolve"><efeatyp Sync="TRUE">Simple</efeatyp><efeageom Sync="TRUE">Polygon</efeageom><esritopo Sync="TRUE">FALSE</esritopo><efeacnt Sync="TRUE">0</efeacnt><spindex Sync="TRUE">FALSE</spindex><linrefer Sync="TRUE">TRUE</linrefer></esriterm><sdtsterm Name="plandoTopo_Dissolve"><sdtstype Sync="TRUE">G-polygon</sdtstype><ptvctcnt Sync="TRUE">0</ptvctcnt></sdtsterm></ptvctinf></spdoinfo><spref><horizsys><cordsysn><geogcsn Sync="TRUE">GCS_RGF_1993</geogcsn><projcsn Sync="TRUE">RGF93_Lambert_93</projcsn></cordsysn><planar><planci><plance Sync="TRUE">coordinate pair</plance><plandu Sync="TRUE">meters</plandu><coordrep><absres Sync="TRUE">0.000000</absres><ordres Sync="TRUE">0.000000</ordres></coordrep></planci><mapproj><mapprojn Sync="TRUE">Lambert Conformal Conic</mapprojn><lambertc><stdparll Sync="TRUE">44.000000</stdparll><stdparll Sync="TRUE">49.000000</stdparll><longcm Sync="TRUE">3.000000</longcm><latprjo Sync="TRUE">46.500000</latprjo><feast Sync="TRUE">700000.000000</feast><fnorth Sync="TRUE">6600000.000000</fnorth></lambertc></mapproj></planar><geodetic><horizdn Sync="TRUE">D_RGF_1993</horizdn><ellips Sync="TRUE">Geodetic Reference System 80</ellips><semiaxis Sync="TRUE">6378137.000000</semiaxis><denflat Sync="TRUE">298.257222</denflat></geodetic></horizsys><vertdef><altsys><altenc Sync="TRUE">Explicit elevation coordinate included with horizontal coordinates</altenc><altres Sync="TRUE">0.000100</altres></altsys></vertdef></spref><refSysInfo><RefSystem><refSysID><identCode Sync="TRUE">RGF93_Lambert_93</identCode></refSysID></RefSystem></refSysInfo><spatRepInfo><VectSpatRep><topLvl><TopoLevCd Sync="TRUE" value="001"></TopoLevCd></topLvl><geometObjs Name="plandoTopo_Dissolve"><geoObjTyp><GeoObjTypCd Sync="TRUE" value="001"></GeoObjTypCd></geoObjTyp><geoObjCnt Sync="TRUE">0</geoObjCnt></geometObjs></VectSpatRep></spatRepInfo><eainfo><detailed Name="plandoTopo_Dissolve"><enttyp><enttypl Sync="TRUE">plandoTopo_Dissolve</enttypl><enttypt Sync="TRUE">Feature Class</enttypt><enttypc Sync="TRUE">0</enttypc></enttyp><attr><attrlabl Sync="TRUE">FID</attrlabl><attalias Sync="TRUE">FID</attalias><attrtype Sync="TRUE">OID</attrtype><attwidth Sync="TRUE">4</attwidth><atprecis Sync="TRUE">0</atprecis><attscale Sync="TRUE">0</attscale><attrdef Sync="TRUE">Internal feature number.</attrdef><attrdefs Sync="TRUE">ESRI</attrdefs><attrdomv><udom Sync="TRUE">Sequential unique whole numbers that are automatically generated.</udom></attrdomv></attr><attr><attrlabl Sync="TRUE">Shape</attrlabl><attalias Sync="TRUE">Shape</attalias><attrtype Sync="TRUE">Geometry</attrtype><attwidth Sync="TRUE">0</attwidth><atprecis Sync="TRUE">0</atprecis><attscale Sync="TRUE">0</attscale><attrdef Sync="TRUE">Feature geometry.</attrdef><attrdefs Sync="TRUE">ESRI</attrdefs><attrdomv><udom Sync="TRUE">Coordinates defining the features.</udom></attrdomv></attr><attr><attrlabl Sync="TRUE">Code_Lac</attrlabl><attalias Sync="TRUE">Code_Lac</attalias><attrtype Sync="TRUE">String</attrtype><attwidth Sync="TRUE">10</attwidth></attr></detailed></eainfo><mdDateSt Sync="TRUE">20110810</mdDateSt><dataqual><lineage><procstep><procdesc Sync="TRUE">Dataset moved.</procdesc><srcused Sync="TRUE">X:\SIGHYAX\Eau_Hydrographie\hydrologie\france\Plan_deau\BD-Topo-ASSEMBLAGE_cemagref\New Folder (2)\LacTopoAG_perm_int</srcused><procdate Sync="TRUE">20110727</procdate><proctime Sync="TRUE">15475300</proctime></procstep><procstep><procdesc Sync="TRUE">Dataset copied.</procdesc><srcused Sync="TRUE">X:\SIGHYAX\Eau_Hydrographie\hydrologie\france\Plan_deau\BD-Topo-ASSEMBLAGE_cemagref\LacTopoAG_perm_int</srcused><procdate Sync="TRUE">20110810</procdate><proctime Sync="TRUE">17180800</proctime></procstep></lineage></dataqual></metadata>

src/main/java/pikelake/Grid.java

 package pikelake;
 
-import fr.cemagref.simaqualife.extensions.spatial2D.Grid2D;
-//import fr.cemagref.simaqualife.extensions.spatial2D.Grid2D.NeighborsType;
-import fr.cemagref.simaqualife.kernel.AquaNismsGroup;
-import fr.cemagref.simaqualife.kernel.util.TransientParameters.InitTransientParameters;
-import fr.cemagref.simaqualife.pilot.Pilot;
-
+//import java.io.File;
+//import java.io.FileNotFoundException;
 import java.util.ArrayList;
 import java.util.List;
+//import java.util.Scanner;
+//import java.util.StringTokenizer;
 
 import pikelake.pikes.Pike;
+import umontreal.iro.lecuyer.probdist.UniformDist;
+import umontreal.iro.lecuyer.randvar.UniformGen;
+import fr.cemagref.simaqualife.extensions.spatial2D.Grid2D;
+import fr.cemagref.simaqualife.kernel.AquaNismsGroup;
+import fr.cemagref.simaqualife.kernel.util.TransientParameters.InitTransientParameters;
+import fr.cemagref.simaqualife.pilot.Pilot;
 
 public class Grid extends Grid2D<Cell, Individual> {
 
@@ -18,13 +22,83 @@ public class Grid extends Grid2D<Cell, Individual> {
         // TODO Auto-generated constructor stub
     }
 
+    private double habitatValue0 = .25;
+    private double habitatValue1 = .5;
+    private double habitatValue2 = 1;
+
+    //transient private UniformGen uniformGen;
+    transient private double[] habitatValues;
     @InitTransientParameters
-    public void initTransientParameters(Pilot pilot) {
-        // TODO intialisation de chaque maille avec le hsi
+    public void initTransientParameters(Pilot pilot) {// throws FileNotFoundException {
+        
+       // this.pos = neighborsType.getPos();
+
+        habitatValues = new double[3];
+        habitatValues[0] = habitatValue0;
+        habitatValues[1] = habitatValue1;
+        habitatValues[2] = habitatValue2;
+
+        UniformGen uniformGen = new UniformGen(pilot.getRandomStream(), new UniformDist(0, habitatValues.length - 1));
+
+        grid = new Cell[gridWidth * gridHeight];
+        for (int i = 0; i < grid.length; i++) {
+            double hab = habitatValues[(int) Math.round(uniformGen.nextDouble())];
+            grid[i] = new Cell(i, hab);
+        }
     	
-        // TODO empty grid
-        this.grid = new Cell[]{new Cell(0, 0.0), new Cell(1, 0.0)};
+    	/*int cptLigne = 0, idLigne = 0;
+        double hsiStd = 0, hsiMoy = 0;
+
+        StringTokenizer sLigne;
+    	// TODO empty grid
+        this.grid = new Cell[gridWidth * gridHeight];
         
+        // TODO intialisation de chaque maille avec le hsi
+    	String filePath = "/PikeLake/data/input/hsi_BROAUTOMNE507.txt";
+    	 
+    	Scanner scanner = new Scanner(new File(filePath));
+    	 
+    	// On boucle sur chaque ligne detect
+    	while (scanner.hasNextLine()) {
+    	    // Rcupration ligne
+    		String line = scanner.nextLine();
+    	    
+    		cptLigne = cptLigne + 1;
+    	    
+    		// Decoupage ligne : id, hsiStd, hsiMoy
+    		sLigne = new StringTokenizer (line);
+    		if (sLigne.hasMoreTokens()) {
+    			idLigne = Integer.parseInt(sLigne.nextToken());
+	    	   	System.out.println(idLigne);
+    		} else if (sLigne.hasMoreTokens()) {
+	    	   	hsiStd = Double.parseDouble(sLigne.nextToken());
+	    	   	System.out.println(hsiStd);
+    		} else if (sLigne.hasMoreTokens()) {
+	    	   	hsiMoy = Double.parseDouble(sLigne.nextToken());
+	    	   	System.out.println(hsiMoy);
+    		}
+	    	
+    	   if (Integer.toString(idLigne) != "Id") {   
+    		   // Initialisation Grille
+    		   if (idLigne == cptLigne) {
+    			   grid[cptLigne - 1] = new Cell(cptLigne, hsiMoy);
+    			   cptLigne = cptLigne + 1;
+	    	   } else {
+		    	   // Si maille hors du shape
+		    	   while (idLigne != cptLigne) {
+		    		   grid[cptLigne - 1] = new Cell(cptLigne, -1);
+		    		   cptLigne = cptLigne + 1;
+		    	   }
+	    	   }
+    	    }
+    	}
+    	// Remplissage toutes les mailles restantes
+    	while (idLigne != gridWidth * gridHeight) {
+ 		   grid[cptLigne - 1] = new Cell(cptLigne, -1);
+ 		   cptLigne = cptLigne + 1;
+ 	   }
+    	
+    	scanner.close();*/
     }
 
     @SuppressWarnings("rawtypes")

src/main/java/pikelake/Individual.java

@@ -17,6 +17,11 @@ public abstract class Individual extends AquaNism<Cell,Grid> implements Comparab
    @Observable(description = "weight (g)")
    protected double weight;
     
+   /**
+    * <code>sexe</code> Sexe de l'individu (0: Femelle, 1: Male)
+    */   
+   protected boolean sexe;
+   
     public Individual(Pilot pilot, Cell position) {
         super(pilot, position);
         this.age = 0;