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CMakeLists.txt 38.76 KiB
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#
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# Copyright (C) 2005-2019 Centre National d'Etudes Spatiales (CNES)
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#
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# This file is part of Orfeo Toolbox
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#
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#     https://www.orfeo-toolbox.org/
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#
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# Licensed under the Apache License, Version 2.0 (the "License");
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# you may not use this file except in compliance with the License.
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# You may obtain a copy of the License at
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#
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#     http://www.apache.org/licenses/LICENSE-2.0
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#
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# Unless required by applicable law or agreed to in writing, software
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# distributed under the License is distributed on an "AS IS" BASIS,
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# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
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# See the License for the specific language governing permissions and
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# limitations under the License.
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#
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otb_module_test()
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#----------- ComputeOGRLayersFeaturesStatistics TESTS ----------------
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otb_test_application(NAME apTvClComputeOGRLayersFeaturesStatistics
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  APP  ComputeOGRLayersFeaturesStatistics
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  OPTIONS -inshp ${INPUTDATA}/Classification/apTvClLabeledVector.shp
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  -feat meanB0 meanB1 meanB2 meanB3 varB0 varB1 varB2 varB3
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  -outstats ${TEMP}/apTvClComputeOGRLayersFeaturesStatistics.xml
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  VALID   --compare-ascii ${NOTOL}
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  ${OTBAPP_BASELINE_FILES}/apTvClComputeOGRLayersFeaturesStatistics.xml
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  ${TEMP}/apTvClComputeOGRLayersFeaturesStatistics.xml)
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#----------- SOMClassification TESTS ----------------
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otb_test_application(NAME apTvClSOMClassificationSmall
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  APP  SOMClassification
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  OPTIONS -in ${INPUTDATA}/poupees_sub.png
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  -rand 121212
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  -out ${TEMP}/apTvClSOMClassificationSmall.tif uint16
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  VALID   --compare-image ${NOTOL}
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  ${BASELINE}/apTvClSOMClassificationSmall.tif
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  ${TEMP}/apTvClSOMClassificationSmall.tif)
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otb_test_application(NAME apTvClSOMClassificationFull
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  APP  SOMClassification
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  OPTIONS -in  ${INPUTDATA}/poupees_sub.png
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  -out ${TEMP}/apTvClSOMClassificationFull.tif uint16
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  -vm  ${INPUTDATA}/poupees_sub_c1.png
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  -tp  0.8
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  -ts  13000
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  -som ${TEMP}/apTvClSOMClassificationMap.tif
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  -sx  30
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  -sy  30
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  -nx  9
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  -ny  9
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  -ni  5
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  -bi  1.0
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  -bf  0.1
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  -iv  0
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  -rand 121212
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  VALID   --compare-n-images ${NOTOL} 2
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  ${BASELINE}/apTvClSOMClassificationFull.tif
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  ${TEMP}/apTvClSOMClassificationFull.tif
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  ${BASELINE}/apTvClSOMClassificationMap.tif
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  ${TEMP}/apTvClSOMClassificationMap.tif)
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#----------- ImageClassifier TESTS ----------------
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# Input file types
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set(raster_input_format ".tif")
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set(vector_input_format ".sqlite")
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set(stat_input_format ".xml") # Input file depending on classifier set(libsvm_input "") set(svm_input "") set(boost_input "Water_Vegetation") set(dt_input "") set(ann_input "") set(bayes_input "") set(rf_input "") set(knn_input "") # Output type set(raster_output_format ".tif") set(raster_output_option "uint8") # Output model type depending on classifier set(libsvm_output_format ".libsvm") set(svm_output_format ".svm") set(boost_output_format ".boost") set(dt_output_format ".dt") set(ann_output_format ".ann") set(bayes_output_format ".bayes") set(rf_output_format ".rf") set(knn_output_format ".knn") set(sharkrf_output_format ".txt") set(sharkkm_output_format ".txt") # Training algorithms parameters set(libsvm_parameters "-classifier.libsvm.opt" "true" "-classifier.libsvm.prob" "true") #set(svm_parameters "-classifier.svm.opt" "true") set(boost_parameters "") set(dt_parameters "") set(ann_parameters "-classifier.ann.sizes" "100") set(bayes_parameters "") set(rf_parameters "") set(knn_parameters "") set(sharkrf_parameters "") set(sharkkm_parameters "") # Validation depending on mode set(ascii_comparison --compare-ascii ${EPSILON_6}) set(ascii_confmat_comparison --compare-ascii 2) set(raster_comparison --compare-image ${NOTOL}) set(raster_comparison_two --compare-n-images ${NOTOL} 2) set(raster_comparison_three --compare-n-images ${NOTOL} 3) # Reference ffiles depending on modes set(ascii_ref_path ${OTBAPP_BASELINE_FILES}) set(raster_ref_path ${OTBAPP_BASELINE}) set(classifierList) #if(OTB_USE_LIBSVM) #list(APPEND classifierList "LIBSVM") #endif() if(OTB_USE_OPENCV) #list(APPEND classifierList "SVM" "BOOST" "DT" "ANN" "BAYES" "RF" "KNN") list(APPEND classifierList "BOOST" "DT" "ANN" "BAYES" "RF" "KNN") if(NOT OTB_OPENCV_3) set(dt_output_format "cv2.dt") endif() endif() if(OTB_USE_SHARK) list(APPEND classifierList "SHARKRF" "SHARKKM") endif() set(classifier_with_confmap "LIBSVM" "BOOST" "KNN" "ANN" "RF") set(classifier_with_probamap "SHARKRF") # This is a black list for classifier that can not have a baseline
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# because they are using randomness and seed can not be set set(classifier_without_baseline "") # Loop on classifiers foreach(classifier ${classifierList}) string(TOLOWER ${classifier} lclassifier) # Derive output file name set(OUTMODELFILE cl${classifier}_ModelQB1${${lclassifier}_output_format}) # Derive confusion matrix file name set(OUTCONFMATFILE cl${classifier}_ConfMatQB1${${lclassifier}_output_format}) set(OUTRASTER cl${classifier}LabeledImageQB1${raster_output_format}) set(OUTCONFMAP cl${classifier}ConfidenceMapQB1${raster_output_format}) set(OUTPROBAMAP cl${classifier}ProbabilityMapQB1${raster_output_format}) list(FIND classifier_without_baseline ${classifier} _classifier_has_baseline) if(${_classifier_has_baseline} EQUAL -1) set(valid ${ascii_confmat_comparison} ${ascii_ref_path}/${OUTCONFMATFILE} ${TEMP}/${OUTCONFMATFILE}) else() set(valid "") endif() otb_test_application( NAME apTvClTrainMethod${classifier}ImagesClassifierQB1 APP TrainImagesClassifier OPTIONS -io.il ${INPUTDATA}/Classification/QB_1_ortho${raster_input_format} -io.vd ${INPUTDATA}/Classification/VectorData_${${lclassifier}_input}QB1_utm31n${vector_input_format} -io.imstat ${INPUTDATA}/Classification/clImageStatisticsQB1${stat_input_format} -classifier ${lclassifier} ${${lclassifier}_parameters} -io.out ${TEMP}/${OUTMODELFILE} -sample.vfn class -rand 121212 -outxml ${TEMP}/cl${classifier}_OutXML1.xml -io.confmatout ${TEMP}/${OUTCONFMATFILE} VALID ${valid} ) set_tests_properties(apTvClTrainMethod${classifier}ImagesClassifierQB1 PROPERTIES RESOURCE_LOCK ${INPUTDATA}/Classification/VectorData_${${lclassifier}_input}QB1_utm31n${vector_input_format}) if(${_classifier_has_baseline} EQUAL -1) set(valid ${ascii_confmat_comparison} ${ascii_ref_path}/${OUTCONFMATFILE} ${TEMP}/${OUTCONFMATFILE}) else() set(valid "") endif() otb_test_application( NAME apTvClTrainMethod${classifier}ImagesClassifierQB1_InXML1 APP TrainImagesClassifier OPTIONS -inxml ${TEMP}/cl${classifier}_OutXML1.xml -io.out ${TEMP}/OutXML1_${OUTMODELFILE} -io.confmatout ${TEMP}/${OUTCONFMATFILE} VALID ${valid} ) set_tests_properties(apTvClTrainMethod${classifier}ImagesClassifierQB1_InXML1 PROPERTIES DEPENDS apTvClTrainMethod${classifier}ImagesClassifierQB1) list(FIND classifier_with_confmap ${classifier} _classifier_has_confmap) list(FIND classifier_with_probamap ${classifier} _classifier_has_probamap) if(${_classifier_has_confmap} EQUAL -1) otb_test_application( NAME apTvClMethod${classifier}ImageClassifierQB1 APP ImageClassifier OPTIONS -in ${INPUTDATA}/Classification/QB_1_ortho${raster_input_format} -model ${INPUTDATA}/Classification/${OUTMODELFILE} -imstat ${INPUTDATA}/Classification/clImageStatisticsQB1${stat_input_format}
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-out ${TEMP}/${OUTRASTER} ${raster_output_option} VALID ${raster_comparison} ${raster_ref_path}/${OUTRASTER} ${TEMP}/${OUTRASTER} ) else() if(${_classifier_has_probamap} EQUAL -1) otb_test_application( NAME apTvClMethod${classifier}ImageClassifierQB1 APP ImageClassifier OPTIONS -in ${INPUTDATA}/Classification/QB_1_ortho${raster_input_format} -model ${INPUTDATA}/Classification/${OUTMODELFILE} -imstat ${INPUTDATA}/Classification/clImageStatisticsQB1${stat_input_format} -out ${TEMP}/${OUTRASTER} ${raster_output_option} -confmap ${TEMP}/${OUTCONFMAP} VALID ${raster_comparison_two} ${raster_ref_path}/${OUTRASTER} ${TEMP}/${OUTRASTER} ${raster_ref_path}/${OUTCONFMAP} ${TEMP}/${OUTCONFMAP} ) else() message(${classifier}) otb_test_application( NAME apTvClMethod${classifier}ImageClassifierQB1 APP ImageClassifier OPTIONS -in ${INPUTDATA}/Classification/QB_1_ortho${raster_input_format} -model ${INPUTDATA}/Classification/${OUTMODELFILE} -imstat ${INPUTDATA}/Classification/clImageStatisticsQB1${stat_input_format} -out ${TEMP}/${OUTRASTER} ${raster_output_option} -confmap ${TEMP}/${OUTCONFMAP} -nbclasses 4 -probamap ${TEMP}/${OUTPROBAMAP} VALID ${raster_comparison_three} ${raster_ref_path}/${OUTRASTER} ${TEMP}/${OUTRASTER} ${raster_ref_path}/${OUTCONFMAP} ${TEMP}/${OUTCONFMAP} ${raster_ref_path}/${OUTPROBAMAP} ${TEMP}/${OUTPROBAMAP} ) endif() endif() endforeach() #----------- LIBSVM Classifier TESTS ---------------- if(OTB_USE_LIBSVM) otb_test_application(NAME apTvClImageSVMClassifierQB2 APP ImageClassifier OPTIONS -in ${INPUTDATA}/Classification/QB_2_ortho.tif -imstat ${INPUTDATA}/Classification/clImageStatisticsQB1.xml -model ${INPUTDATA}/Classification/clsvmModelQB1.svm -out ${TEMP}/clLabeledImageQB2.tif VALID --compare-image ${NOTOL} ${OTBAPP_BASELINE}/clLabeledImageQB2.tif ${TEMP}/clLabeledImageQB2.tif) otb_test_application(NAME apTvClImageSVMClassifierQB3 APP ImageClassifier OPTIONS -in ${INPUTDATA}/Classification/QB_3_ortho.tif -imstat ${INPUTDATA}/Classification/clImageStatisticsQB1.xml -model ${INPUTDATA}/Classification/clsvmModelQB1.svm -out ${TEMP}/clLabeledImageQB3.tif VALID --compare-image ${NOTOL} ${OTBAPP_BASELINE}/clLabeledImageQB3.tif
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${TEMP}/clLabeledImageQB3.tif) otb_test_application(NAME apTvClImageSVMClassifierQB1 APP ImageClassifier OPTIONS -in ${INPUTDATA}/Classification/QB_1_ortho.tif -imstat ${INPUTDATA}/Classification/clImageStatisticsQB1.xml -model ${INPUTDATA}/Classification/clsvmModelQB1.svm -out ${TEMP}/clLabeledImageQB1.tif VALID --compare-image ${NOTOL} ${OTBAPP_BASELINE}/clLabeledImageQB1.tif ${TEMP}/clLabeledImageQB1.tif) otb_test_application(NAME apTvClImageSVMClassifierQB456_6 APP ImageClassifier OPTIONS -in ${INPUTDATA}/Classification/QB_6_extract.tif -mask ${INPUTDATA}/Classification/QB_6_mask.tif -imstat ${INPUTDATA}/Classification/clImageStatisticsQB456.xml -model ${INPUTDATA}/Classification/clsvmModelQB456.svm -out ${TEMP}/clLabeledImageQB456_6.tif VALID --compare-image ${NOTOL} ${OTBAPP_BASELINE}/clLabeledImageQB456_6.tif ${TEMP}/clLabeledImageQB456_6.tif) otb_test_application(NAME apTvClImageSVMClassifierQB456_4 APP ImageClassifier OPTIONS -in ${INPUTDATA}/Classification/QB_4_extract.tif -imstat ${INPUTDATA}/Classification/clImageStatisticsQB456.xml -model ${INPUTDATA}/Classification/clsvmModelQB456.svm -out ${TEMP}/clLabeledImageQB456_4.tif VALID --compare-image ${NOTOL} ${OTBAPP_BASELINE}/clLabeledImageQB456_4.tif ${TEMP}/clLabeledImageQB456_4.tif) otb_test_application(NAME apTvClImageSVMClassifierQB456_5 APP ImageClassifier OPTIONS -in ${INPUTDATA}/Classification/QB_5_extract.tif -imstat ${INPUTDATA}/Classification/clImageStatisticsQB456.xml -model ${INPUTDATA}/Classification/clsvmModelQB456.svm -out ${TEMP}/clLabeledImageQB456_5.tif VALID --compare-image ${NOTOL} ${OTBAPP_BASELINE}/clLabeledImageQB456_5.tif ${TEMP}/clLabeledImageQB456_5.tif) otb_test_application(NAME apTvClImageSVMClassifierQB123_6 APP ImageClassifier OPTIONS -in ${INPUTDATA}/Classification/QB_6_extract.tif -imstat ${INPUTDATA}/Classification/clImageStatisticsQB123.xml -model ${INPUTDATA}/Classification/clsvmModelQB123.svm -out ${TEMP}/clLabeledImageQB123_6.tif VALID --compare-image ${NOTOL} ${OTBAPP_BASELINE}/clLabeledImageQB123_6.tif ${TEMP}/clLabeledImageQB123_6.tif) otb_test_application(NAME apTvClImageSVMClassifierQB456_1 APP ImageClassifier OPTIONS -in ${INPUTDATA}/Classification/QB_1_ortho.tif -imstat ${INPUTDATA}/Classification/clImageStatisticsQB456.xml -model ${INPUTDATA}/Classification/clsvmModelQB456.svm -out ${TEMP}/clLabeledImageQB456_1.tif VALID --compare-image ${NOTOL} ${OTBAPP_BASELINE}/clLabeledImageQB456_1.tif ${TEMP}/clLabeledImageQB456_1.tif) otb_test_application(NAME apTvClImageSVMClassifierQB123_3 APP ImageClassifier OPTIONS -in ${INPUTDATA}/Classification/QB_3_ortho.tif -imstat ${INPUTDATA}/Classification/clImageStatisticsQB123.xml -model ${INPUTDATA}/Classification/clsvmModelQB123.svm -out ${TEMP}/clLabeledImageQB123_3.tif VALID --compare-image ${NOTOL}
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${OTBAPP_BASELINE}/clLabeledImageQB123_3.tif ${TEMP}/clLabeledImageQB123_3.tif) otb_test_application(NAME apTvClImageSVMClassifierQB123_2 APP ImageClassifier OPTIONS -in ${INPUTDATA}/Classification/QB_2_ortho.tif -imstat ${INPUTDATA}/Classification/clImageStatisticsQB123.xml -model ${INPUTDATA}/Classification/clsvmModelQB123.svm -out ${TEMP}/clLabeledImageQB123_2.tif VALID --compare-image ${NOTOL} ${OTBAPP_BASELINE}/clLabeledImageQB123_2.tif ${TEMP}/clLabeledImageQB123_2.tif) otb_test_application(NAME apTvClImageSVMClassifierQB123_1 APP ImageClassifier OPTIONS -in ${INPUTDATA}/Classification/QB_1_ortho.tif -imstat ${INPUTDATA}/Classification/clImageStatisticsQB123.xml -model ${INPUTDATA}/Classification/clsvmModelQB123.svm -out ${TEMP}/clLabeledImageQB123_1.tif VALID --compare-image ${NOTOL} ${OTBAPP_BASELINE}/clLabeledImageQB123_1.tif ${TEMP}/clLabeledImageQB123_1.tif) endif() #----------- ComputeConfusionMatrix TESTS ---------------- otb_test_application(NAME apTvComputeConfusionMatrixV APP ComputeConfusionMatrix OPTIONS -in ${OTBAPP_BASELINE}/clLabeledImageQB123_1.tif -ref vector -ref.vector.in ${INPUTDATA}/Classification/VectorData_QB1_ter_utm31n.sqlite -ref.vector.field class -out ${TEMP}/apTvComputeConfusionMatrixTconfusionVOut.csv VALID --compare-ascii ${NOTOL} ${OTBAPP_BASELINE_FILES}/apTvComputeConfusionMatrixTconfusionVOut.csv ${TEMP}/apTvComputeConfusionMatrixTconfusionVOut.csv) otb_test_application(NAME apTvComputeConfusionMatrixExtraReferenceLabelsV APP ComputeConfusionMatrix OPTIONS -in ${INPUTDATA}/Classification/QB_1_ortho_C7.tif -ref vector -ref.vector.in ${INPUTDATA}/Classification/VectorData_QB1_ter_utm31n.sqlite -ref.vector.field class -out ${TEMP}/apTvComputeConfusionMatrixExtraRefLabelsVOut.csv VALID --compare-ascii ${NOTOL} ${OTBAPP_BASELINE_FILES}/apTvComputeConfusionMatrixExtraRefLabelsVOut.csv ${TEMP}/apTvComputeConfusionMatrixExtraRefLabelsVOut.csv) otb_test_application(NAME apTvComputeConfusionMatrixExtraReferenceLabelsR APP ComputeConfusionMatrix OPTIONS -in ${INPUTDATA}/Classification/QB_1_ortho_C7.tif -ref raster -ref.raster.in ${INPUTDATA}/Classification/clLabeledImageQB456_1_NoData_255.tif -ref.raster.nodata 255 -nodatalabel 255 -out ${TEMP}/apTvComputeConfusionMatrixExtraRefLabelsROut.csv VALID --compare-ascii ${NOTOL} ${OTBAPP_BASELINE_FILES}/apTvComputeConfusionMatrixExtraRefLabelsROut.csv ${TEMP}/apTvComputeConfusionMatrixExtraRefLabelsROut.csv) otb_test_application(NAME apTvComputeConfusionMatrixR APP ComputeConfusionMatrix OPTIONS -in ${OTBAPP_BASELINE}/clLabeledImageQB123_1.tif -ref raster -ref.raster.in ${INPUTDATA}/Classification/clLabeledImageQB456_1_NoData_255.tif -ref.raster.nodata 255 -nodatalabel 255 -out ${TEMP}/apTvComputeConfusionMatrixTconfusionROut.csv VALID --compare-ascii ${NOTOL} ${OTBAPP_BASELINE_FILES}/apTvComputeConfusionMatrixTconfusionROut.csv
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${TEMP}/apTvComputeConfusionMatrixTconfusionROut.csv) otb_test_application(NAME apTvComputeConfusionMatrixExtraProducedLabelsR APP ComputeConfusionMatrix OPTIONS -in ${INPUTDATA}/Classification/clLabeledImageQB456_1_NoData_255.tif -ref raster -ref.raster.in ${INPUTDATA}/Classification/QB_1_ortho_C8.tif -ref.raster.nodata 255 -nodatalabel 255 -out ${TEMP}/apTvComputeConfusionMatrixExtraProdLabelsROut.csv VALID --compare-ascii ${NOTOL} ${OTBAPP_BASELINE_FILES}/apTvComputeConfusionMatrixExtraProdLabelsROut.csv ${TEMP}/apTvComputeConfusionMatrixExtraProdLabelsROut.csv) #----------- ComputeContingencyTable TESTS ---------------- otb_test_application(NAME apTvComputeContingencyTableExtraProducedLabelsR APP ComputeConfusionMatrix OPTIONS -in ${INPUTDATA}/Classification/clLabeledImageQB456_1_NoData_255.tif -ref raster -ref.raster.in ${INPUTDATA}/Classification/QB_1_ortho_C8.tif -ref.raster.nodata 255 -nodatalabel 255 -format contingencytable -out ${TEMP}/apTvComputeContingencyTableExtraProdLabelsROut.csv VALID --compare-ascii ${NOTOL} ${OTBAPP_BASELINE_FILES}/apTvComputeContingencyTableExtraProdLabelsROut.csv ${TEMP}/apTvComputeContingencyTableExtraProdLabelsROut.csv) #----------- FusionOfClassifications TESTS ---------------- otb_test_application(NAME apTvFusionOfClassificationsDSPrecision6Inputs APP FusionOfClassifications OPTIONS -il ${INPUTDATA}/Classification/QB_1_ortho_C1.tif ${INPUTDATA}/Classification/QB_1_ortho_C2.tif ${INPUTDATA}/Classification/QB_1_ortho_C3.tif ${INPUTDATA}/Classification/QB_1_ortho_C4.tif ${INPUTDATA}/Classification/QB_1_ortho_C5.tif ${INPUTDATA}/Classification/QB_1_ortho_C6.tif -method dempstershafer -method.dempstershafer.cmfl ${INPUTDATA}/Classification/QB_1_ortho_C1.csv ${INPUTDATA}/Classification/QB_1_ortho_C2.csv ${INPUTDATA}/Classification/QB_1_ortho_C3.csv ${INPUTDATA}/Classification/QB_1_ortho_C4.csv ${INPUTDATA}/Classification/QB_1_ortho_C5.csv ${INPUTDATA}/Classification/QB_1_ortho_C6.csv -method.dempstershafer.mob precision -nodatalabel 10 -undecidedlabel 7 -out ${TEMP}/apTvFusionOfClassificationsDS6InputsPrecisionOutput.tif uint8 VALID --compare-image ${NOTOL} ${BASELINE}/QB_1_ortho_DS_FUSED_PRECISION.tif ${TEMP}/apTvFusionOfClassificationsDS6InputsPrecisionOutput.tif) otb_test_application(NAME apTvFusionOfClassificationsMV3Inputs APP FusionOfClassifications OPTIONS -il ${INPUTDATA}/Classification/clLabeledImageQB123_1.tif ${INPUTDATA}/Classification/clLabeledImageQB456_1.tif ${INPUTDATA}/Classification/clLabeledImageQB1.tif -method majorityvoting -undecidedlabel 100 -out ${TEMP}/apTvFusionOfClassificationsMV3InputsOutput.tif uint16 VALID --compare-image ${NOTOL} ${OTBAPP_BASELINE}/apTvFusionOfClassifications3InputsOutput.tif ${TEMP}/apTvFusionOfClassificationsMV3InputsOutput.tif) otb_test_application(NAME apTvFusionOfClassificationsDSKappa6Inputs APP FusionOfClassifications OPTIONS -il ${INPUTDATA}/Classification/QB_1_ortho_C1.tif ${INPUTDATA}/Classification/QB_1_ortho_C2.tif ${INPUTDATA}/Classification/QB_1_ortho_C3.tif
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${INPUTDATA}/Classification/QB_1_ortho_C4.tif ${INPUTDATA}/Classification/QB_1_ortho_C5.tif ${INPUTDATA}/Classification/QB_1_ortho_C6.tif -method dempstershafer -method.dempstershafer.cmfl ${INPUTDATA}/Classification/QB_1_ortho_C1.csv ${INPUTDATA}/Classification/QB_1_ortho_C2.csv ${INPUTDATA}/Classification/QB_1_ortho_C3.csv ${INPUTDATA}/Classification/QB_1_ortho_C4.csv ${INPUTDATA}/Classification/QB_1_ortho_C5.csv ${INPUTDATA}/Classification/QB_1_ortho_C6.csv -method.dempstershafer.mob kappa -nodatalabel 10 -undecidedlabel 7 -out ${TEMP}/apTvFusionOfClassificationsDS6InputsKappaOutput.tif uint8 VALID --compare-image ${NOTOL} ${BASELINE}/QB_1_ortho_DS_FUSED_KAPPA.tif ${TEMP}/apTvFusionOfClassificationsDS6InputsKappaOutput.tif) otb_test_application(NAME apTvFusionOfClassificationsDSRecall6Inputs APP FusionOfClassifications OPTIONS -il ${INPUTDATA}/Classification/QB_1_ortho_C1.tif ${INPUTDATA}/Classification/QB_1_ortho_C2.tif ${INPUTDATA}/Classification/QB_1_ortho_C3.tif ${INPUTDATA}/Classification/QB_1_ortho_C4.tif ${INPUTDATA}/Classification/QB_1_ortho_C5.tif ${INPUTDATA}/Classification/QB_1_ortho_C6.tif -method dempstershafer -method.dempstershafer.cmfl ${INPUTDATA}/Classification/QB_1_ortho_C1.csv ${INPUTDATA}/Classification/QB_1_ortho_C2.csv ${INPUTDATA}/Classification/QB_1_ortho_C3.csv ${INPUTDATA}/Classification/QB_1_ortho_C4.csv ${INPUTDATA}/Classification/QB_1_ortho_C5.csv ${INPUTDATA}/Classification/QB_1_ortho_C6.csv -method.dempstershafer.mob recall -nodatalabel 10 -undecidedlabel 7 -out ${TEMP}/apTvFusionOfClassificationsDS6InputsRecallOutput.tif uint8 VALID --compare-image ${NOTOL} ${BASELINE}/QB_1_ortho_DS_FUSED_RECALL.tif ${TEMP}/apTvFusionOfClassificationsDS6InputsRecallOutput.tif) otb_test_application(NAME apTvFusionOfClassificationsDSAccuracy6Inputs APP FusionOfClassifications OPTIONS -il ${INPUTDATA}/Classification/QB_1_ortho_C1.tif ${INPUTDATA}/Classification/QB_1_ortho_C2.tif ${INPUTDATA}/Classification/QB_1_ortho_C3.tif ${INPUTDATA}/Classification/QB_1_ortho_C4.tif ${INPUTDATA}/Classification/QB_1_ortho_C5.tif ${INPUTDATA}/Classification/QB_1_ortho_C6.tif -method dempstershafer -method.dempstershafer.cmfl ${INPUTDATA}/Classification/QB_1_ortho_C1.csv ${INPUTDATA}/Classification/QB_1_ortho_C2.csv ${INPUTDATA}/Classification/QB_1_ortho_C3.csv ${INPUTDATA}/Classification/QB_1_ortho_C4.csv ${INPUTDATA}/Classification/QB_1_ortho_C5.csv ${INPUTDATA}/Classification/QB_1_ortho_C6.csv -method.dempstershafer.mob accuracy -nodatalabel 10 -undecidedlabel 7 -out ${TEMP}/apTvFusionOfClassificationsDS6InputsAccuracyOutput.tif uint8 VALID --compare-image ${NOTOL} ${BASELINE}/QB_1_ortho_DS_FUSED_ACCURACY.tif ${TEMP}/apTvFusionOfClassificationsDS6InputsAccuracyOutput.tif) otb_test_application(NAME apTvFusionOfClassificationsMV2Inputs APP FusionOfClassifications OPTIONS -il ${INPUTDATA}/Classification/clLabeledImageQB123_1.tif ${INPUTDATA}/Classification/clLabeledImageQB456_1.tif -method majorityvoting -undecidedlabel 100
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-out ${TEMP}/apTvFusionOfClassificationsMV2InputsOutput.tif uint16 VALID --compare-image ${NOTOL} ${OTBAPP_BASELINE}/apTvFusionOfClassifications2InputsOutput.tif ${TEMP}/apTvFusionOfClassificationsMV2InputsOutput.tif) #----------- KMeansClassification TESTS ---------------- if(OTB_USE_SHARK) otb_test_application(NAME apTvClKMeansImageClassification_composite APP KMeansClassification OPTIONS -in ${INPUTDATA}/qb_RoadExtract.img -vm ${INPUTDATA}/qb_RoadExtract_mask_binary.png -ts 30000 -nc 5 -maxit 10000 -sampler periodic -rand 121212 -nodatalabel 255 -centroids.out ${TEMP}/apTvClKMeansImageClassificationFilterOutMeans.txt -out ${TEMP}/apTvClKMeansImageClassificationFilterOutput.tif uint8 -cleanup 0 VALID --compare-image ${NOTOL} ${OTBAPP_BASELINE}/apTvClKMeansImageClassificationFilterOutput.tif ${TEMP}/apTvClKMeansImageClassificationFilterOutput.tif ) endif() if(OTB_USE_SHARK) otb_test_application(NAME apTvClKMeansImageClassification_inputCentroids APP KMeansClassification OPTIONS -in ${INPUTDATA}/qb_RoadExtract.img -ts 30000 -nc 5 -maxit 10000 -sampler periodic -nodatalabel 255 -rand 121212 -centroids.in ${INPUTDATA}/Classification/KMeansInputCentroids.txt -out ${TEMP}/apTvClKMeansImageClassificationInputCentroids.tif uint8 -cleanup 0 VALID --compare-image ${NOTOL} ${OTBAPP_BASELINE}/apTvClKMeansImageClassificationInputCentroids.tif ${TEMP}/apTvClKMeansImageClassificationInputCentroids.tif ) endif() #----------- TrainImagesClassifier TESTS ---------------- if(OTB_USE_LIBSVM) otb_test_application(NAME apTvClTrainSVMImagesClassifierQB1_allOpt_InXML APP TrainImagesClassifier OPTIONS -inxml ${TEMP}/clsvmModelQB1_allOpt.xml -io.out ${TEMP}/clsvmModelQB1_allOpt_InXML.svm -io.confmatout ${TEMP}/clsvmConfMatQB1_allOpt_InXML.svm VALID ${ascii_confmat_comparison} ${OTBAPP_BASELINE_FILES}/clsvmConfMatQB1_allOpt.svm ${TEMP}/clsvmConfMatQB1_allOpt_InXML.svm) set_tests_properties(apTvClTrainSVMImagesClassifierQB1_allOpt_InXML PROPERTIES DEPENDS apTvClTrainSVMImagesClassifierQB1_allOpt) otb_test_application(NAME apTvClTrainSVMImagesClassifierQB123 APP TrainImagesClassifier OPTIONS -io.il ${INPUTDATA}/Classification/QB_1_ortho.tif ${INPUTDATA}/Classification/QB_2_ortho.tif ${INPUTDATA}/Classification/QB_3_ortho.tif -io.vd ${INPUTDATA}/Classification/VectorData_QB1_utm31n.sqlite ${INPUTDATA}/Classification/VectorData_QB2_utm31n.sqlite ${INPUTDATA}/Classification/VectorData_QB3_utm31n.sqlite -io.imstat ${INPUTDATA}/Classification/clImageStatisticsQB123.xml -sample.vfn class -classifier libsvm -classifier.libsvm.opt true
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-io.out ${TEMP}/clsvmModelQB123.svm -rand 121212) # RK: 09/2016. same reason explained for leTvSVMImageModelEstimatorTrainWithOptimization test # VALID --compare-ascii ${NOTOL} # ${OTBAPP_BASELINE_FILES}/clsvmModelQB123.svm # ${TEMP}/clsvmModelQB123.svm otb_test_application(NAME apTvClTrainSVMImagesClassifierQB1 APP TrainImagesClassifier OPTIONS -io.il ${INPUTDATA}/Classification/QB_1_ortho.tif -io.vd ${INPUTDATA}/Classification/VectorData_QB1_utm31n.sqlite -io.imstat ${INPUTDATA}/Classification/clImageStatisticsQB1.xml -classifier libsvm -classifier.libsvm.opt true -sample.vfn class -io.out ${TEMP}/clsvmModelQB1.svm -io.confmatout ${TEMP}/clsvmConfMatQB1.svm -rand 121212 VALID ${ascii_confmat_comparison} ${OTBAPP_BASELINE_FILES}/clsvmConfMatQB1.svm ${TEMP}/clsvmConfMatQB1.svm) otb_test_application(NAME apTvClTrainSVMImagesClassifierQB456 APP TrainImagesClassifier OPTIONS -io.il ${INPUTDATA}/Classification/QB_4_extract.tif ${INPUTDATA}/Classification/QB_5_extract.tif ${INPUTDATA}/Classification/QB_6_extract.tif -io.vd ${INPUTDATA}/Classification/VectorData_QB4_utm31n.sqlite ${INPUTDATA}/Classification/VectorData_QB5_utm31n.sqlite ${INPUTDATA}/Classification/VectorData_QB6_utm31n.sqlite -io.imstat ${INPUTDATA}/Classification/clImageStatisticsQB456.xml -sample.vfn class -classifier libsvm -classifier.libsvm.opt true -io.out ${TEMP}/clsvmModelQB456.svm -rand 121212) # RK: 09/2016. same reason explained for leTvSVMImageModelEstimatorTrainWithOptimization test # VALID --compare-ascii ${NOTOL} # ${OTBAPP_BASELINE_FILES}/clsvmModelQB456.svm # ${TEMP}/clsvmModelQB456.svm otb_test_application(NAME apTvClTrainSVMImagesClassifierQB1_allOpt APP TrainImagesClassifier OPTIONS -io.il ${INPUTDATA}/Classification/QB_1_ortho.tif -io.vd ${INPUTDATA}/Classification/VectorData_QB1_utm31n.sqlite -io.imstat ${INPUTDATA}/Classification/clImageStatisticsQB1.xml -classifier libsvm -sample.mv 100 -sample.mt 100 -sample.vtr 0.5 -sample.vfn class -classifier.libsvm.opt true -rand 121212 -io.out ${TEMP}/clsvmModelQB1_allOpt.svm -io.confmatout ${TEMP}/clsvmConfMatQB1_allOpt.svm -outxml ${TEMP}/clsvmModelQB1_allOpt.xml VALID ${ascii_confmat_comparison} ${OTBAPP_BASELINE_FILES}/clsvmConfMatQB1_allOpt.svm ${TEMP}/clsvmConfMatQB1_allOpt.svm) endif() #----------- ClassificationMapRegularization TESTS ---------------- otb_test_application(NAME apTvClassificationMapRegularization APP ClassificationMapRegularization OPTIONS -io.in ${OTBAPP_BASELINE}/clLabeledImageQB123_1.tif -io.out ${TEMP}/clLabeledImageQB123_1_CMR_r2_nodl_10_undl_7.tif -ip.radius 2 -ip.suvbool true -ip.nodatalabel 10
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-ip.undecidedlabel 7 VALID --compare-image ${NOTOL} ${OTBAPP_BASELINE}/clLabeledImageQB123_1_CMR_r2_nodl_10_undl_7.tif ${TEMP}/clLabeledImageQB123_1_CMR_r2_nodl_10_undl_7.tif) #----------- OGRLayerClassifier TESTS ---------------- #----------- VectorClassifier TESTS ---------------- if(OTB_USE_OPENCV) otb_test_application(NAME apTvClSVMVectorClassifier APP VectorClassifier OPTIONS -in ${INPUTDATA}/Classification/apTvClLabeledVector.shp -instat ${OTBAPP_BASELINE_FILES}/apTvClComputeOGRLayersFeaturesStatistics.xml -model ${OTBAPP_BASELINE_FILES}/apTvClModel.svm -out ${TEMP}/apTvClSVMLabeledVector.shp -feat meanB0 meanB1 meanB2 meanB3 varB0 varB1 varB2 varB3 -cfield class VALID --compare-ogr 0.0 ${OTBAPP_BASELINE_FILES}/apTvClSVMLabeledVector.shp ${TEMP}/apTvClSVMLabeledVector.shp) endif() #----------- ComputeImagesStatistics TESTS ---------------- otb_test_application(NAME apTvClComputeImagesStatisticsQB1 APP ComputeImagesStatistics OPTIONS -il ${INPUTDATA}/Classification/QB_1_ortho.tif -out ${TEMP}/apTvClEstimateImageStatisticsQB1.xml VALID --compare-ascii ${NOTOL} ${OTBAPP_BASELINE_FILES}/clImageStatisticsQB1.xml ${TEMP}/apTvClEstimateImageStatisticsQB1.xml) otb_test_application(NAME apTvClComputeImagesStatisticsQB456 APP ComputeImagesStatistics OPTIONS -il ${INPUTDATA}/Classification/QB_4_extract.tif ${INPUTDATA}/Classification/QB_5_extract.tif ${INPUTDATA}/Classification/QB_6_extract.tif -out ${TEMP}/apTvClEstimateImageStatisticsQB456.xml VALID --compare-ascii ${NOTOL} ${OTBAPP_BASELINE_FILES}/clImageStatisticsQB456.xml ${TEMP}/apTvClEstimateImageStatisticsQB456.xml) otb_test_application(NAME apTvClComputeImagesStatisticsQB123 APP ComputeImagesStatistics OPTIONS -il ${INPUTDATA}/Classification/QB_1_ortho.tif ${INPUTDATA}/Classification/QB_2_ortho.tif ${INPUTDATA}/Classification/QB_3_ortho.tif -out ${TEMP}/apTvClEstimateImageStatisticsQB123.xml VALID --compare-ascii ${NOTOL} ${OTBAPP_BASELINE_FILES}/clImageStatisticsQB123.xml ${TEMP}/apTvClEstimateImageStatisticsQB123.xml) if(OTB_USE_OPENCV) #----------- TrainRegression TESTS ---------------- # y = 0.01*x^2 + 1.5*x - 300 otb_test_application(NAME apTvClTrainRegressionTest_monovar APP TrainRegression OPTIONS -io.il ${INPUTDATA}/QB_Toulouse_Ortho_regression.tif -io.imstat ${INPUTDATA}/QB_Toulouse_Ortho_regression.xml -io.out ${TEMP}/apTvClTrainRegressionTest_monovar.rf -sample.mt 20000 -sample.mv 20000 -sample.vtr 0.5 -rand 121212 -classifier rf -classifier.rf.ra 0.0001 -classifier.rf.max 6 -classifier.rf.acc 0.0005 TESTENVOPTIONS ${TEMP}/apTvClTrainRegressionTest_monovar.txt VALID ${ascii_comparison}
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${OTBAPP_BASELINE_FILES}/apTvClTrainRegressionTest_monovar.txt ${TEMP}/apTvClTrainRegressionTest_monovar.txt) #----------- PredictRegression TESTS ---------------- otb_test_application(NAME apTvClPredictRegressionTest_monovar APP PredictRegression OPTIONS -in ${INPUTDATA}/QB_Toulouse_Ortho_PAN.tif -model ${OTBAPP_BASELINE_FILES}/apTvClTrainRegressionTest_monovar.rf -imstat ${INPUTDATA}/QB_Toulouse_Ortho_regression.xml -out ${TEMP}/apTvClPredictRegressionTest_monovar.tif VALID --compare-image 1 ${OTBAPP_BASELINE}/apTvClPredictRegressionTest_monovar.tif ${TEMP}/apTvClPredictRegressionTest_monovar.tif) endif() #----------- PolygonClassStatistics TESTS ---------------- otb_test_application(NAME apTvClPolygonClassStatisticsTest APP PolygonClassStatistics OPTIONS -in ${INPUTDATA}/Classification/QB_1_ortho.tif -vec ${INPUTDATA}/Classification/VectorData_QB1_utm31n.sqlite -field class -out ${TEMP}/apTvClPolygonClassStatisticsOut.xml VALID --compare-ascii ${NOTOL} ${OTBAPP_BASELINE_FILES}/apTvClPolygonClassStatisticsOut.xml ${TEMP}/apTvClPolygonClassStatisticsOut.xml) #----------- SampleSelection TESTS ----------------------- otb_test_application(NAME apTvClSampleSelection APP SampleSelection OPTIONS -in ${INPUTDATA}/Classification/QB_1_ortho.tif -vec ${INPUTDATA}/Classification/VectorData_QB1_utm31n.sqlite -field class -out ${TEMP}/apTvClSampleSelectionOut.sqlite -instats ${OTBAPP_BASELINE_FILES}/apTvClPolygonClassStatisticsOut.xml -outrates ${TEMP}/apTvClSampleSelectionOutRates.txt -strategy byclass -strategy.byclass.in ${INPUTDATA}/Classification/sampling_required.csv -sampler periodic VALID --compare-ogr ${NOTOL} ${OTBAPP_BASELINE_FILES}/apTvClSampleSelectionOut.sqlite ${TEMP}/apTvClSampleSelectionOut.sqlite) #----------- SampleExtraction TESTS ----------------------- otb_test_application(NAME apTvClSampleExtraction APP SampleExtraction OPTIONS -in ${INPUTDATA}/Classification/QB_1_ortho.tif -vec ${INPUTDATA}/Classification/apTvClSampleSelectionOut.sqlite -field class -out ${TEMP}/apTvClSampleExtractionOut.sqlite VALID --compare-ogr ${NOTOL} ${OTBAPP_BASELINE_FILES}/apTvClSampleExtractionOut.sqlite ${TEMP}/apTvClSampleExtractionOut.sqlite) #----------- TrainVectorClassifier TESTS ---------------- if(OTB_USE_OPENCV) otb_test_application(NAME apTvClTrainVectorClassifier APP TrainVectorClassifier OPTIONS -io.vd ${INPUTDATA}/Classification/apTvClSampleExtractionOut.sqlite -feat value_0 value_1 value_2 value_3 -cfield class -classifier rf -io.confmatout ${TEMP}/apTvClTrainVectorClassifierConfMat.txt -io.out ${TEMP}/apTvClTrainVectorClassifierModel.rf VALID ${ascii_comparison} ${OTBAPP_BASELINE_FILES}/apTvClTrainVectorClassifierModel.rf ${TEMP}/apTvClTrainVectorClassifierModel.rf) endif() #----------- TrainVectorRegression TESTS ----------------
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if(OTB_USE_OPENCV) otb_test_application(NAME apTvClTrainVectorRegression APP TrainVectorRegression OPTIONS -io.vd ${INPUTDATA}/Classification/apTvClSampleExtractionOut.sqlite -feat value_0 value_1 value_2 value_3 -cfield class -classifier rf -io.out ${TEMP}/apTvClTrainVectorRegressionModel.rf -io.mse ${TEMP}/apTvClTrainVectorRegressionModel.txt TESTENVOPTIONS ${TEMP}/apTvClTrainVectorRegressionModel.txt VALID ${ascii_comparison} ${OTBAPP_BASELINE_FILES}/apTvClTrainVectorRegressionModel.txt ${TEMP}/apTvClTrainVectorRegressionModel.txt) endif() #----------- TrainVectorClassifier unsupervised TESTS ---------------- if(OTB_USE_SHARK) otb_test_application(NAME apTvClTrainVectorUnsupervised APP TrainVectorClassifier OPTIONS -io.vd ${INPUTDATA}/Classification/apTvClSampleExtractionOut.sqlite -feat value_0 value_1 value_2 value_3 -classifier sharkkm -io.out ${TEMP}/apTvClTrainVectorClusteringModel.txt) otb_test_application(NAME apTvClTrainVectorUnsupervisedWithClass APP TrainVectorClassifier OPTIONS -io.vd ${INPUTDATA}/Classification/apTvClSampleExtractionOut.sqlite -feat value_0 value_1 value_2 value_3 -cfield class -classifier sharkkm -io.out ${TEMP}/apTvClTrainVectorClusteringModelWithClass.txt) endif() #------------ MultiImageSamplingRate TESTS ---------------- otb_test_application( NAME apTvClMultiImageSamplingRate APP MultiImageSamplingRate OPTIONS -il ${INPUTDATA}/Classification/vector_stats_QB1.xml ${INPUTDATA}/Classification/vector_stats_QB2.xml ${INPUTDATA}/Classification/vector_stats_QB3.xml -out ${TEMP}/apTvClMultiImageSamplingRate_out.csv -strategy constant -strategy.constant.nb "300" -mim proportional VALID --compare-n-ascii ${NOTOL} 3 ${OTBAPP_BASELINE_FILES}/apTvClMultiImageSamplingRate_out_1.csv ${TEMP}/apTvClMultiImageSamplingRate_out_1.csv ${OTBAPP_BASELINE_FILES}/apTvClMultiImageSamplingRate_out_2.csv ${TEMP}/apTvClMultiImageSamplingRate_out_2.csv ${OTBAPP_BASELINE_FILES}/apTvClMultiImageSamplingRate_out_3.csv ${TEMP}/apTvClMultiImageSamplingRate_out_3.csv ) #------------ SampleAgmentation TESTS ---------------- otb_test_application(NAME apTvClSampleAugmentationReplicate APP SampleAugmentation OPTIONS -in ${INPUTDATA}/Classification/apTvClSampleExtractionOut.sqlite -field class -label 3 -samples 100 -out ${TEMP}/apTvClSampleAugmentationReplicate.sqlite -exclude originfid -strategy replicate ) otb_test_application(NAME apTvClSampleAugmentationJitter APP SampleAugmentation OPTIONS -in ${INPUTDATA}/Classification/apTvClSampleExtractionOut.sqlite -field class -label 3
911912913914915916917918919920921922923924925926927928929930931932933934935936937938939940941942943944945946947948949950951952953954955956957958959960961962963964965966967968969970971972973974975976977978979980
-samples 100 -out ${TEMP}/apTvClSampleAugmentationJitter.sqlite -exclude originfid -strategy jitter -strategy.jitter.stdfactor 10 ) otb_test_application(NAME apTvClSampleAugmentationSmote APP SampleAugmentation OPTIONS -in ${INPUTDATA}/Classification/apTvClSampleExtractionOut.sqlite -field class -label 3 -samples 100 -out ${TEMP}/apTvClSampleAugmentationSmote.sqlite -exclude originfid -strategy smote -strategy.smote.neighbors 5 ) #----------- ZonalStatistics TESTS ---------------- otb_test_application(NAME apTvClZonalStatisticsVec APP ZonalStatistics OPTIONS -inzone vector -inzone.vector.in ${INPUTDATA}/Classification/VectorData_QB1_ter_utm31n.sqlite -out.vector.filename ${TEMP}/apTvClVectorData_QB1_ter_with_stats.sqlite -in ${INPUTDATA}/Classification/QB_1_ortho.tif -inzone.vector.reproject 1 VALID --compare-ogr ${EPSILON_9} ${OTBAPP_BASELINE_FILES}/apTvClVectorData_QB1_ter_with_stats.sqlite ${TEMP}/apTvClVectorData_QB1_ter_with_stats.sqlite) otb_test_application(NAME apTvClZonalStatisticsImg APP ZonalStatistics OPTIONS -inzone labelimage -inzone.labelimage.in ${INPUTDATA}/Classification/VectorData_QB1_ter.tif -out.xml.filename ${TEMP}/apTvClVectorData_QB1_ter_stats.xml -in ${INPUTDATA}/Classification/QB_1_ortho.tif -out xml VALID --compare-ascii ${NOTOL} ${OTBAPP_BASELINE_FILES}/apTvClVectorData_QB1_ter_stats.xml ${TEMP}/apTvClVectorData_QB1_ter_stats.xml) otb_test_application(NAME apTvClZonalStatisticsImgNoData APP ZonalStatistics OPTIONS -inzone labelimage -inzone.labelimage.in ${INPUTDATA}/Classification/VectorData_QB1_ter.tif -out.xml.filename ${TEMP}/apTvClVectorData_QB1_ter_stats_nodata.xml -in ${INPUTDATA}/Classification/QB_1_ortho.tif -inzone.labelimage.nodata -1 -out xml VALID --compare-ascii ${NOTOL} ${OTBAPP_BASELINE_FILES}/apTvClVectorData_QB1_ter_stats_nodata.xml ${TEMP}/apTvClVectorData_QB1_ter_stats_nodata.xml) otb_test_application(NAME apTvClZonalStatisticsInVecOutRaster APP ZonalStatistics OPTIONS -in ${INPUTDATA}/Classification/QB_1_ortho.tif -inzone vector -inzone.vector.in ${INPUTDATA}/Classification/VectorData_QB1_ter_utm31n.sqlite -inzone.vector.reproject 1 -out raster -out.raster.filename ${TEMP}/apTvClZonalStats_QB1_ter_with_stats_invec.tif -out.raster.bv -1 VALID --compare-image 1 ${OTBAPP_BASELINE}/apTvClZonalStats_QB1_ter_with_stats_invec.tif ${TEMP}/apTvClZonalStats_QB1_ter_with_stats_invec.tif ) otb_test_application(NAME apTvClZonalStatisticsInRasterOutRaster APP ZonalStatistics OPTIONS -in ${INPUTDATA}/Classification/QB_1_ortho.tif -inzone labelimage -inzone.labelimage.in ${INPUTDATA}/Classification/VectorData_QB1_ter.tif -inzone.labelimage.nodata -1 -out raster -out.raster.filename ${TEMP}/apTvClZonalStats_QB1_ter_with_stats_inraster.tif VALID --compare-image 1 ${OTBAPP_BASELINE}/apTvClZonalStats_QB1_ter_with_stats_inraster.tif ${TEMP}/apTvClZonalStats_QB1_ter_with_stats_inraster.tif )
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