Commit d03e9a81 authored by Commandre Benjamin's avatar Commandre Benjamin
Browse files

Merge branch 'develop' into 'master'

Fichier d'installation + doc

See merge request benjamin.commandre/sentinel-3a!1
parents ccc53b79 b41ffeaa
This diff is collapsed.
......@@ -8,7 +8,7 @@ import signal
from contextlib import contextmanager
import inspect
from osgeo import gdal
import Constantes
import app.Constantes as Constantes
class Fusion(argparse.Action):
def __init__(self, option_strings, dest, nargs=None, **kwargs):
......@@ -98,6 +98,22 @@ def limitation_temporelle(secondes):
# pass
def clip(image, cut, form="Mem", dst=""):
"""
Découpe une image selon un shapefile donné. Si le type de l'image en sortie
n'est pas spécifié, l'image sera retournée en pointeur mémoire et ne sera pas sauvegardée.
:param image: Chemin vers l'image dans laquelle on veut découper l'emprise.
:type image: Chaîne de caractères
:param cut: Chemin vers le shapefile représentant l'emprise.
:type cut: Chaîne de caractères
:param form: Format de l'image en sortie.
:type form: Chaîne de caractères
:param dst: Chemin de l'image en sortie.
:type dst: Chaîne de caractères
"""
option_clip = gdal.WarpOptions(cropToCutline=True,\
cutlineDSName=cut, outputType=gdal.GDT_Float32 , format=form, dstNodata='NaN')
......
......@@ -27,7 +27,7 @@ class Processing(object):
if not self.annee_fin :
self.annee_fin = datetime.datetime.now().year
self.check_download = Archive.Archive(self.capteur, self.niveau, self.emprise, self.resultats, self.annee_debut, self.annee_fin)
self.check_download = Archive.Archive(self.capteur, self.niveau, self.emprise, self.resultats, self.annee_debut, int(self.annee_fin))
self.check_download.listing()
self.check_download.download_auto(self.id, self.mdp, self.proxy)
......@@ -41,6 +41,9 @@ class Processing(object):
self.liste_dossier[annee] = sorted([x for x in glob.glob("{}/{}/Images/*".format(self.resultats, annee)) if x.endswith(".tif")])
def otbPhenologie(self):
"""
Appel le module OTB : 'SigmoFitting' sur l'image composée de l'empilement des NDVI
"""
otb_Phenologie = otb.Registry.CreateApplication("SigmoFitting")
otb_Phenologie.SetParameterString("mode", "metrics")
......@@ -94,7 +97,7 @@ class Processing(object):
def i_images_processing(self):
"""
Calul le ndvi, fusionnne en une seule image puis lance le module OTBPhenologie
Calul le ndvi, fusionnne en une seule image puis lance le module OTBPhenology
"""
self.calcul_ndvi()
self.otbPhenologie()
\ No newline at end of file
......@@ -9,7 +9,7 @@ SATELLITE = collections.defaultdict(dict)
########################## SENTINEL2 ###############################
SATELLITE["SENTINEL2"]["server"] = "https://theia.cnes.fr/atdistrib"
SATELLITE["SENTINEL2"]["serveur"] = "https://theia.cnes.fr/atdistrib"
SATELLITE["SENTINEL2"]["resto"] = "resto2"
SATELLITE["SENTINEL2"]["token_type"] = "text"
SATELLITE["SENTINEL2"]["R"] = 2
......@@ -17,7 +17,7 @@ SATELLITE["SENTINEL2"]["PIR"] = 3
########################## LANDSAT #################################
SATELLITE["Landsat"]["server"] = "https://theia-landsat.cnes.fr"
SATELLITE["Landsat"]["serveur"] = "https://theia-landsat.cnes.fr"
SATELLITE["Landsat"]["resto"] = "resto"
SATELLITE["Landsat"]["token_type"] = "json"
SATELLITE["Landsat"]["R"] = 3
......
# Minimal makefile for Sphinx documentation
#
# You can set these variables from the command line.
SPHINXOPTS =
SPHINXBUILD = sphinx-build
SPHINXPROJ = Sentinel-3A
SOURCEDIR = source
BUILDDIR = build
# Put it first so that "make" without argument is like "make help".
help:
@$(SPHINXBUILD) -M help "$(SOURCEDIR)" "$(BUILDDIR)" $(SPHINXOPTS) $(O)
.PHONY: help Makefile
# Catch-all target: route all unknown targets to Sphinx using the new
# "make mode" option. $(O) is meant as a shortcut for $(SPHINXOPTS).
%: Makefile
@$(SPHINXBUILD) -M $@ "$(SOURCEDIR)" "$(BUILDDIR)" $(SPHINXOPTS) $(O)
\ No newline at end of file
# Sphinx build info version 1
# This file hashes the configuration used when building these files. When it is not found, a full rebuild will be done.
config: a88ad48e93a6109d7a7da9e9f0fdea0f
tags: 645f666f9bcd5a90fca523b33c5a78b7
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(merge-rule "\IeC {\cyrje }" "ј" :string)
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(merge-rule "\IeC {\cyrz }" "з" :string)
(merge-rule "\IeC {\cyrzh }" "ж" :string)
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;; filename: LICRlatin2utf8.xdy
;; description: style file for xindy which maps back LaTeX Internal
;; Character Representation of letters (as arising in .idx index
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;; usage: for use with the pdflatex engine,
;; *not* for use with xelatex or lualatex.
;;
;; This is based upon xindy's distributed file tex/inputenc/utf8.xdy.
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;;
;; - Updates for compatibility with current LaTeX macro encoding.
;;
;; - Systematic usage of the \IeC {...} mark-up, because mark-up in
;; tex/inputenc/utf8.xdy was using it on seemingly random basis, and
;; Sphinx coercing of xindy usability for both Latin and Cyrillic scripts
;; with pdflatex requires its systematic presence here.
;;
;; - Support for some extra letters: Ÿ, Ŋ, ŋ, Œ, œ, IJ, ij, ȷ and ẞ.
;;
;; Indeed Sphinx needs to support for pdflatex engine all Unicode letters
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;; covered by original tex/inputenc/utf8.xdy.
;;
;; - There is a problem that ȷ is not supported out-of-the box by LaTeX
;; with inputenc, one must add explicitely
;; \DeclareUnicodeCharacter{0237}{\j}
;; to preamble of LaTeX document. However this character is not supported
;; by the TeX "times" font used by default by Sphinx for pdflatex engine.
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;; **Update**: since LaTeX 2018/12/01, the \j as well as \SS, \k{} and
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;;
;; - ẞ needs \DeclareUnicodeCharacter{1E9E}{\SS} (but ß needs no extra set-up).
;;
;; - U+02DB (˛) and U+02D9 (˙) are also not supported by inputenc
;; out of the box and require
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;;
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(merge-rule "\IeC {\v N}" "Ň" :string)
(merge-rule "\IeC {\v r}" "ř" :string)
(merge-rule "\IeC {\v R}" "Ř" :string)
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(merge-rule "\IeC {\v S}" "Š" :string)
(merge-rule "\IeC {\textasciicaron }" "ˇ" :string)
(merge-rule "\IeC {\v t}" "ť" :string)
(merge-rule "\IeC {\v T}" "Ť" :string)
(merge-rule "\IeC {\v z}" "ž" :string)
(merge-rule "\IeC {\v Z}" "Ž" :string)
(merge-rule "\IeC {\'y}" "ý" :string)
(merge-rule "\IeC {\'Y}" "Ý" :string)
(merge-rule "\IeC {\~"y}" "ÿ" :string)
(merge-rule "\IeC {\'z}" "ź" :string)
(merge-rule "\IeC {\'Z}" "Ź" :string)
(merge-rule "\IeC {\.z}" "ż" :string)
(merge-rule "\IeC {\.Z}" "Ż" :string)
;; letters not in Latin1, 2, 3 but available in TeX T1 font encoding
(merge-rule "\IeC {\~"Y}" "Ÿ" :string)
(merge-rule "\IeC {\NG }" "Ŋ" :string)
(merge-rule "\IeC {\ng }" "ŋ" :string)
(merge-rule "\IeC {\OE }" "Œ" :string)
(merge-rule "\IeC {\oe }" "œ" :string)
(merge-rule "\IeC {\IJ }" "IJ" :string)
(merge-rule "\IeC {\ij }" "ij" :string)
(merge-rule "\IeC {\j }" "ȷ" :string)
(merge-rule "\IeC {\SS }" "ẞ" :string)
This diff is collapsed.
# Makefile for Sphinx LaTeX output
ALLDOCS = $(basename $(wildcard *.tex))
ALLPDF = $(addsuffix .pdf,$(ALLDOCS))
ALLDVI = $(addsuffix .dvi,$(ALLDOCS))
ALLXDV =
ALLPS = $(addsuffix .ps,$(ALLDOCS))
ALLIMGS = $(wildcard *.png *.gif *.jpg *.jpeg)
# Prefix for archive names
ARCHIVEPREFIX =
# Additional LaTeX options (passed via variables in latexmkrc/latexmkjarc file)
export LATEXOPTS =
# Additional latexmk options
LATEXMKOPTS =
# format: pdf or dvi (used only by archive targets)
FMT = pdf
LATEX = latexmk -dvi
PDFLATEX = latexmk -pdf -dvi- -ps-
%.png %.gif %.jpg %.jpeg: FORCE_MAKE
extractbb '$@'
%.dvi: %.tex FORCE_MAKE
$(LATEX) $(LATEXMKOPTS) '$<'
%.ps: %.dvi
dvips '$<'
%.pdf: %.tex FORCE_MAKE
$(PDFLATEX) $(LATEXMKOPTS) '$<'
all: $(ALLPDF)
all-dvi: $(ALLDVI)
all-ps: $(ALLPS)
all-pdf: $(ALLPDF)
zip: all-$(FMT)
mkdir $(ARCHIVEPREFIX)docs-$(FMT)
cp $(ALLPDF) $(ARCHIVEPREFIX)docs-$(FMT)
zip -q -r -9 $(ARCHIVEPREFIX)docs-$(FMT).zip $(ARCHIVEPREFIX)docs-$(FMT)
rm -r $(ARCHIVEPREFIX)docs-$(FMT)
tar: all-$(FMT)
mkdir $(ARCHIVEPREFIX)docs-$(FMT)
cp $(ALLPDF) $(ARCHIVEPREFIX)docs-$(FMT)
tar cf $(ARCHIVEPREFIX)docs-$(FMT).tar $(ARCHIVEPREFIX)docs-$(FMT)
rm -r $(ARCHIVEPREFIX)docs-$(FMT)
gz: tar
gzip -9 < $(ARCHIVEPREFIX)docs-$(FMT).tar > $(ARCHIVEPREFIX)docs-$(FMT).tar.gz
bz2: tar
bzip2 -9 -k $(ARCHIVEPREFIX)docs-$(FMT).tar
xz: tar
xz -9 -k $(ARCHIVEPREFIX)docs-$(FMT).tar
clean:
rm -f *.log *.ind *.aux *.toc *.syn *.idx *.out *.ilg *.pla *.ps *.tar *.tar.gz *.tar.bz2 *.tar.xz $(ALLPDF) $(ALLDVI) $(ALLXDV) *.fls *.fdb_latexmk
.PHONY: all all-pdf all-dvi all-ps clean zip tar gz bz2 xz
.PHONY: FORCE_MAKE
\ No newline at end of file
%% Generated by Sphinx.
\def\sphinxdocclass{report}
\documentclass[letterpaper,10pt,french]{sphinxmanual}
\ifdefined\pdfpxdimen
\let\sphinxpxdimen\pdfpxdimen\else\newdimen\sphinxpxdimen
\fi \sphinxpxdimen=.75bp\relax
\PassOptionsToPackage{warn}{textcomp}
\usepackage[utf8]{inputenc}
\ifdefined\DeclareUnicodeCharacter
% support both utf8 and utf8x syntaxes
\edef\sphinxdqmaybe{\ifdefined\DeclareUnicodeCharacterAsOptional\string"\fi}
\DeclareUnicodeCharacter{\sphinxdqmaybe00A0}{\nobreakspace}
\DeclareUnicodeCharacter{\sphinxdqmaybe2500}{\sphinxunichar{2500}}
\DeclareUnicodeCharacter{\sphinxdqmaybe2502}{\sphinxunichar{2502}}
\DeclareUnicodeCharacter{\sphinxdqmaybe2514}{\sphinxunichar{2514}}
\DeclareUnicodeCharacter{\sphinxdqmaybe251C}{\sphinxunichar{251C}}
\DeclareUnicodeCharacter{\sphinxdqmaybe2572}{\textbackslash}
\fi
\usepackage{cmap}
\usepackage[T1]{fontenc}
\usepackage{amsmath,amssymb,amstext}
\usepackage{babel}
\usepackage{times}
\usepackage[Sonny]{fncychap}
\ChNameVar{\Large\normalfont\sffamily}
\ChTitleVar{\Large\normalfont\sffamily}
\usepackage{sphinx}
\fvset{fontsize=\small}
\usepackage{geometry}
% Include hyperref last.
\usepackage{hyperref}
% Fix anchor placement for figures with captions.
\usepackage{hypcap}% it must be loaded after hyperref.
% Set up styles of URL: it should be placed after hyperref.
\urlstyle{same}
\addto\captionsfrench{\renewcommand{\contentsname}{Contents:}}
\addto\captionsfrench{\renewcommand{\figurename}{Fig.}}
\addto\captionsfrench{\renewcommand{\tablename}{Tableau}}
\addto\captionsfrench{\renewcommand{\literalblockname}{Code source}}
\addto\captionsfrench{\renewcommand{\literalblockcontinuedname}{suite de la page précédente}}
\addto\captionsfrench{\renewcommand{\literalblockcontinuesname}{suite sur la page suivante}}
\addto\captionsfrench{\renewcommand{\sphinxnonalphabeticalgroupname}{Non-alphabetical}}
\addto\captionsfrench{\renewcommand{\sphinxsymbolsname}{Symboles}}
\addto\captionsfrench{\renewcommand{\sphinxnumbersname}{Numbers}}
\addto\extrasfrench{\def\pageautorefname{page}}
\setcounter{tocdepth}{1}
\title{Sentinel-3A Documentation}
\date{janv. 24, 2019}
\release{}
\author{COMMANDRÉ Benjamin}
\newcommand{\sphinxlogo}{\vbox{}}
\renewcommand{\releasename}{}
\makeindex
\begin{document}
\ifdefined\shorthandoff
\ifnum\catcode`\=\string=\active\shorthandoff{=}\fi
\ifnum\catcode`\"=\active\shorthandoff{"}\fi
\fi
\pagestyle{empty}
\sphinxmaketitle
\pagestyle{plain}
\sphinxtableofcontents
\pagestyle{normal}
\phantomsection\label{\detokenize{index::doc}}
\chapter{Installation}
\label{\detokenize{install:installation}}\label{\detokenize{install::doc}}
\section{Téléchargement Phymobat}
\label{\detokenize{install:telechargement-phymobat}}
Le programme Phymobat peut être cloné à partir du Gitlab Irstea à l’adresse suivante : \sphinxurl{https://gitlab.irstea.fr/benjamin.commandre/PHYMOBAT\_2018.git}
La branche courante est \sphinxcode{\sphinxupquote{develop}}
\section{Installation SIG open source}
\label{\detokenize{install:installation-sig-open-source}}
La chaîne de traitement est construite sous divers outils open-source, comme \sphinxcode{\sphinxupquote{GDAL}} et \sphinxcode{\sphinxupquote{OGR}}. La démarche à suivre pour installer ces outils est indiquée ci-dessous uniquement sous Linux.
\begin{itemize}
\item {}
Ajouter le dépôt ubuntugis-unstable
\end{itemize}
\begin{sphinxVerbatim}[commandchars=\\\{\}]
\PYGZdl{} sudo add\PYGZhy{}apt\PYGZhy{}repository ppa:ubuntugis/ubuntugis\PYGZhy{}unstable
\PYGZdl{} sudo apt\PYGZhy{}get update
\end{sphinxVerbatim}
\subsection{GDAL}
\label{\detokenize{install:gdal}}
\begin{sphinxVerbatim}[commandchars=\\\{\}