Commit dab0599d authored by Björn Reineking's avatar Björn Reineking

Working version of gaussian gradient magnitude

parent 29baebfb
......@@ -2,12 +2,10 @@
#include <Rcpp.h>
#include <vigra/multi_array.hxx>
#include <vigra/multi_convolution.hxx>
#include <vigra/numerictraits.hxx>
//#include <vigra/multi_blockwise.hxx>
#include <vigra/convolution.hxx>
using namespace Rcpp;
using namespace vigra;
//' Gaussian gradient magnitude
//' Magnitude of Gaussian gradient.
......@@ -20,11 +18,22 @@ NumericMatrix gaussian_gradient_magnitude(NumericMatrix x, double sigma) {
const int nrows = x.nrow();
const int ncols = x.ncol();
Shape2 shape(nrows, ncols);
MultiArrayView<2, double> input_image(shape, x.begin());
MultiArrayView<2, double> src(shape, x.begin());
NumericMatrix result(nrows, ncols);
MultiArrayView<2, double> output_image(shape, result.begin());
// gaussianGradientMagnitude(input_image, output_image, sigma);
//std::copy(output_image.begin(), output_image.end(), result.begin());
MultiArrayView<2, double> dest(shape, result.begin());
// The following line does not compile, so we calculate things explicitly
// gaussianGradientMagnitude(src, dest, sigma);
MultiArray<2, TinyVector<float, 2> > grad(src.shape());
gaussianGradient(src, grad, sigma);
MultiArrayView<2, float, StridedArrayTag> first = grad.bindElementChannel(0);
MultiArrayView<2, float, StridedArrayTag> second = grad.bindElementChannel(1);
NumericVector first_result(nrows*ncols);
NumericVector second_result(nrows*ncols);
std::copy(first.begin(), first.end(), first_result.begin());
std::copy(second.begin(), second.end(), second_result.begin());
NumericVector result_vector(nrows*ncols);
result_vector = first_result * first_result + second_result * second_result;
Rcpp::algorithm::sqrt(result_vector.begin(), result_vector.end(), result.begin());
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