new samples

README.md

@@ -3,14 +3,26 @@
 ## link to DATA
 
 ```bash
-ln -s ~/DIGESTOMIC/DATA/DIGESTOMIC_J177_A_02_03_16_S3_all_R1_001.fastq.gz DATA/raw/J177_A_R1.fastq.gz
-ln -s ~/DIGESTOMIC/DATA/DIGESTOMIC_J177_A_02_03_16_S3_all_R2_001.fastq.gz DATA/raw/J177_A_R2.fastq.gz
-ln -s ~/DIGESTOMIC/DATA/DIGESTOMIC_J177_B_02_03_16_S4_all_R1_001.fastq.gz DATA/raw/J177_B_R1.fastq.gz
-ln -s ~/DIGESTOMIC/DATA/DIGESTOMIC_J177_B_02_03_16_S4_all_R2_001.fastq.gz DATA/raw/J177_B_R2.fastq.gz
-ln -s ~/DIGESTOMIC/DATA/DIGESTOMIC_J80_A_26_11_15_S1_all_R1_001.fastq.gz DATA/raw/J80_A_R1.fastq.gz
-ln -s ~/DIGESTOMIC/DATA/DIGESTOMIC_J80_A_26_11_15_S1_all_R2_001.fastq.gz DATA/raw/J80_A_R2.fastq.gz
-ln -s ~/DIGESTOMIC/DATA/DIGESTOMIC_J80_B_26_11_15_S2_all_R1_001.fastq.gz DATA/raw/J80_B_R1.fastq.gz
-ln -s ~/DIGESTOMIC/DATA/DIGESTOMIC_J80_B_26_11_15_S2_all_R2_001.fastq.gz DATA/raw/J80_B_R2.fastq.gz
+ln -s /projet/maiage/save/cmidoux/DIGESTOMIC/DATA/DIGESTOMIC_J177_A_02_03_16_S3_all_R1_001.fastq.gz DATA/raw/J177_A_R1.fastq.gz
+ln -s /projet/maiage/save/cmidoux/DIGESTOMIC/DATA/DIGESTOMIC_J177_A_02_03_16_S3_all_R2_001.fastq.gz DATA/raw/J177_A_R2.fastq.gz
+ln -s /projet/maiage/save/cmidoux/DIGESTOMIC/DATA/DIGESTOMIC_J177_B_02_03_16_S4_all_R1_001.fastq.gz DATA/raw/J177_B_R1.fastq.gz
+ln -s /projet/maiage/save/cmidoux/DIGESTOMIC/DATA/DIGESTOMIC_J177_B_02_03_16_S4_all_R2_001.fastq.gz DATA/raw/J177_B_R2.fastq.gz
+ln -s /projet/maiage/save/cmidoux/DIGESTOMIC/DATA/DIGESTOMIC_J218_A_120416_S5_all_R1_001.fastq.gz DATA/raw/J218_A_R1.fastq.gz
+ln -s /projet/maiage/save/cmidoux/DIGESTOMIC/DATA/DIGESTOMIC_J218_A_120416_S5_all_R2_001.fastq.gz DATA/raw/J218_A_R2.fastq.gz
+ln -s /projet/maiage/save/cmidoux/DIGESTOMIC/DATA/DIGESTOMIC_J218_B_120416_S6_all_R1_001.fastq.gz DATA/raw/J218_B_R1.fastq.gz
+ln -s /projet/maiage/save/cmidoux/DIGESTOMIC/DATA/DIGESTOMIC_J218_B_120416_S6_all_R2_001.fastq.gz DATA/raw/J218_B_R2.fastq.gz
+ln -s /projet/maiage/save/cmidoux/DIGESTOMIC/DATA/DIGESTOMIC_J281_A_140616_S1_all_R1_001.fastq.gz DATA/raw/J281_A_R1.fastq.gz
+ln -s /projet/maiage/save/cmidoux/DIGESTOMIC/DATA/DIGESTOMIC_J281_A_140616_S1_all_R2_001.fastq.gz DATA/raw/J281_A_R2.fastq.gz
+ln -s /projet/maiage/save/cmidoux/DIGESTOMIC/DATA/DIGESTOMIC_J281_B_140616_S2_all_R1_001.fastq.gz DATA/raw/J281_B_R1.fastq.gz
+ln -s /projet/maiage/save/cmidoux/DIGESTOMIC/DATA/DIGESTOMIC_J281_B_140616_S2_all_R2_001.fastq.gz DATA/raw/J281_B_R2.fastq.gz
+ln -s /projet/maiage/save/cmidoux/DIGESTOMIC/DATA/DIGESTOMIC_J462_A_121216_S3_all_R1_001.fastq.gz DATA/raw/J462_A_R1.fastq.gz
+ln -s /projet/maiage/save/cmidoux/DIGESTOMIC/DATA/DIGESTOMIC_J462_A_121216_S3_all_R2_001.fastq.gz DATA/raw/J462_A_R2.fastq.gz
+ln -s /projet/maiage/save/cmidoux/DIGESTOMIC/DATA/DIGESTOMIC_J462_B_121216_S4_all_R1_001.fastq.gz DATA/raw/J462_B_R1.fastq.gz
+ln -s /projet/maiage/save/cmidoux/DIGESTOMIC/DATA/DIGESTOMIC_J462_B_121216_S4_all_R2_001.fastq.gz DATA/raw/J462_B_R2.fastq.gz
+ln -s /projet/maiage/save/cmidoux/DIGESTOMIC/DATA/DIGESTOMIC_J80_A_26_11_15_S1_all_R1_001.fastq.gz DATA/raw/J80_A_R1.fastq.gz
+ln -s /projet/maiage/save/cmidoux/DIGESTOMIC/DATA/DIGESTOMIC_J80_A_26_11_15_S1_all_R2_001.fastq.gz DATA/raw/J80_A_R2.fastq.gz
+ln -s /projet/maiage/save/cmidoux/DIGESTOMIC/DATA/DIGESTOMIC_J80_B_26_11_15_S2_all_R1_001.fastq.gz DATA/raw/J80_B_R1.fastq.gz
+ln -s /projet/maiage/save/cmidoux/DIGESTOMIC/DATA/DIGESTOMIC_J80_B_26_11_15_S2_all_R2_001.fastq.gz DATA/raw/J80_B_R2.fastq.gz
 ```
 
 ## ghostKOALA

config.json

 {
 	"THREADS": 12,
 	"MEM": 15,
-	"SAMPLES": ["J177_A", "J177_B", "J80_A", "J80_B"],
+	"SAMPLES": ["J80_A", "J80_B", "J177_A", "J177_B", "J218_A", "J218_B", "J281_A", "J281_B", "J462_A", "J462_B"],
 	"NORMALIZATION": true
 }