filter log

b0ea3a92 · Midoux Cedric · f3e5201c · b0ea3a92
Commit b0ea3a92 authored 5 years ago by Midoux Cedric
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with 3 additions and 1 deletion
+3 -1
--- a/assembly.smk
+++ b/assembly.smk
@@ -74,7 +74,8 @@ rule metaspades:
 	input:
 		unpack(assembly_input)
 	output:
-		contigs = "work/metaSPADES/{reads}/{reads}.contigs.fasta"
+		contigs = "work/metaSPADES/{reads}/{reads}.contigs.fasta",
+		log = "work/metaSPADES/{reads}/{reads}-filter.log"
 	threads:
 		20
 	params:
@@ -94,6 +95,7 @@ rule metaspades:
 		"filterSeq.py "
 		"-i work/metaSPADES/{wildcards.reads}/contigs.fasta "
 		"-o {output.contigs} "
+		"-l {output.log} "
 		"--min-length {params.min_len} "
 def contigs_input(wildcards):