Commit b0ea3a92 authored by Midoux Cedric's avatar Midoux Cedric
Browse files

filter log

parent f3e5201c
......@@ -74,7 +74,8 @@ rule metaspades:
input:
unpack(assembly_input)
output:
contigs = "work/metaSPADES/{reads}/{reads}.contigs.fasta"
contigs = "work/metaSPADES/{reads}/{reads}.contigs.fasta",
log = "work/metaSPADES/{reads}/{reads}-filter.log"
threads:
20
params:
......@@ -94,6 +95,7 @@ rule metaspades:
"filterSeq.py "
"-i work/metaSPADES/{wildcards.reads}/contigs.fasta "
"-o {output.contigs} "
"-l {output.log} "
"--min-length {params.min_len} "
def contigs_input(wildcards):
......
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