conda activate prodigal-2.6.3

d1b03d47 · Midoux Cedric · 326c79bf · d1b03d47
Commit d1b03d47 authored 4 years ago by Midoux Cedric
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with 4 additions and 4 deletions
+4 -4
--- a/annotation.smk
+++ b/annotation.smk
@@ -32,8 +32,8 @@ rule prodigal:
 		ffn = "work/prodigal/{sample}/{sample}_prodigal.ffn",
 		gff = "work/prodigal/{sample}/{sample}_prodigal.gff"
 	shell:
-		# "conda activate prodigal-2.6.3 "
+		"conda activate prodigal-2.6.3 "
-		# "&& "
+		"&& "
 		"prodigal "
 		"-f gff "
 		"-i {input} "
@@ -44,8 +44,8 @@ rule prodigal:
 		"-p meta "
 		"&& "
 		"sed --in-place 's/*$//' {output.faa} "
-		# "&& "
+		"&& "
-		# "conda deactivate "
+		"conda deactivate "
 def faa_input(wildcards):
 	if wildcards.sample == "catalogue":