catalogue debug

fa45c8fd · Midoux Cedric · 714cfafb · fa45c8fd · fa45c8fd
Commit fa45c8fd authored 5 years ago by Midoux Cedric
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with 4 additions and 4 deletions
+4 -4
--- a/annotation.smk
+++ b/annotation.smk
@@ -41,7 +41,7 @@ rule prodigal:
 def faa_input(wildcards):
 	if wildcards.sample == "catalogue":
-		return ["work/cdhit/catalogue.faa"]
+		return {"faa": "work/cdhit/catalogue.faa"}
 	else :
 		if config["PROTEINS-PREDICTOR"] == "FragGeneScan":
 			return {"faa": "work/FGS/{wildcards.sample}/{wildcards.sample}_FGS.faa".format(wildcards=wildcards)}

--- a/catalogue.smk
+++ b/catalogue.smk
@@ -83,10 +83,10 @@ rule cd_hit_2D:
 rule faa_catalogue:
 	input:
-		ffn = "work/cdhit/catalogue.ffn"
+		ffn = "work/cdhit/catalogue.ffn",
-		faa = expand("work/prodigal/{sample}/{sample}.faa", sample=config["SAMPLES"])
+		faa = expand("work/prodigal/{sample}/{sample}_prodigal.faa", sample=config["SAMPLES"])
 	output:
-		list = temp("work/cdhit/catalogue.list")
+		list = temp("work/cdhit/catalogue.list"),
 		faa = "work/cdhit/catalogue.faa"
 	threads:
 		2