geau Version: 1.0.0.0

dev/commit-message

+geau Version: 1.0.0.0
+
+0 errors ✔ | 0 warnings ✔ | 0 notes ✔
+
+Note de version :
+    * NEW add.inset : ajout d'un encart dans une carte
+    * NEW kable_units : faire un kable en gérant les unités
+
+DESCRIPTION
+    * Version: 1.0.0.0
+    
+R/add.inset.R
+    * Première version de la fonction
+
+R/kable_units.R
+    * Première version de la fonction
+
+data
+    * RAS
+
+Documentation mise à jour
+    * add.inset.Rd
+    * kable_units.Rd
+
+Vignettes
+    * RAS
+
+dev
+    * package.development.R
+    * commit-message
+        
+presentation
+
+MISC
+    * .Rbuildignore
+    * LICENSE.md: automatique
+    * NAMESPACE: automatique
+
+

dev/package.development.R

+package = "geau" ; devtools::document(package) ; devtools::load_all(package)
+
+### Vignettes
+# setwd(package):usethis::use_vignette(package);setwd("..")
+devtools::build_vignettes(package)
+
+### Examples
+# devtools::run_examples(package)
+
+### Checks
+# system("mv ~/.Rprofile ~/.Rprofile-temp");devtools::check(package);system("mv ~/.Rprofile-temp ~/.Rprofile")
+
+### Build
+devtools::build(package, path = "library", vignettes = TRUE)
+
+### install -> sudo
+# devtools::install_local(package)
\ No newline at end of file

geau/.Rbuildignore

@@ -5,3 +5,4 @@
 ^presentation$
 ^temp$
 ^.vscode$
+^LICENSE\.md$

geau/DESCRIPTION

+Package: geau
+Title: Utilities very useful to share within geau-inondation team
+Version: 1.0.0.0
+Authors@R: 
+    person(given = "Frédéric",
+           family = "Grelot",
+           role = c("aut", "cre"),
+           email = "frederic.grelot@inrae.fr",
+           comment = c(ORCID = "YOUR-ORCID-ID"))
+Description: This package collects some very useful utilities to work in a
+    collaborative way within geau-inondation.
+License: GPL (>= 3)
+Encoding: UTF-8
+Depends: R (>= 3.4.0)
+LazyData: true
+Imports:
+    kableExtra,
+    knitr,
+    rio,
+    terra,
+    sf
+Suggests: 
+    rmarkdown,
+    testthat
+Roxygen: list(markdown = TRUE)
+RoxygenNote: 7.1.1
+VignetteBuilder: knitr
+
+
+
+

geau/LICENSE.md

+GNU General Public License
+==========================
+
+_Version 3, 29 June 2007_  
+_Copyright © 2007 Free Software Foundation, Inc. &lt;<http://fsf.org/>&gt;_
+
+Everyone is permitted to copy and distribute verbatim copies of this license
+document, but changing it is not allowed.
+
+## Preamble
+
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+to the present version, but may differ in detail to address new problems or concerns.
+
+Each version is given a distinguishing version number. If the Program specifies that
+a certain numbered version of the GNU General Public License “or any later
+version” applies to it, you have the option of following the terms and
+conditions either of that numbered version or of any later version published by the
+Free Software Foundation. If the Program does not specify a version number of the GNU
+General Public License, you may choose any version ever published by the Free
+Software Foundation.
+
+If the Program specifies that a proxy can decide which future versions of the GNU
+General Public License can be used, that proxy's public statement of acceptance of a
+version permanently authorizes you to choose that version for the Program.
+
+Later license versions may give you additional or different permissions. However, no
+additional obligations are imposed on any author or copyright holder as a result of
+your choosing to follow a later version.
+
+### 15. Disclaimer of Warranty
+
+THERE IS NO WARRANTY FOR THE PROGRAM, TO THE EXTENT PERMITTED BY APPLICABLE LAW.
+EXCEPT WHEN OTHERWISE STATED IN WRITING THE COPYRIGHT HOLDERS AND/OR OTHER PARTIES
+PROVIDE THE PROGRAM “AS IS” WITHOUT WARRANTY OF ANY KIND, EITHER
+EXPRESSED OR IMPLIED, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF
+MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE. THE ENTIRE RISK AS TO THE
+QUALITY AND PERFORMANCE OF THE PROGRAM IS WITH YOU. SHOULD THE PROGRAM PROVE
+DEFECTIVE, YOU ASSUME THE COST OF ALL NECESSARY SERVICING, REPAIR OR CORRECTION.
+
+### 16. Limitation of Liability
+
+IN NO EVENT UNLESS REQUIRED BY APPLICABLE LAW OR AGREED TO IN WRITING WILL ANY
+COPYRIGHT HOLDER, OR ANY OTHER PARTY WHO MODIFIES AND/OR CONVEYS THE PROGRAM AS
+PERMITTED ABOVE, BE LIABLE TO YOU FOR DAMAGES, INCLUDING ANY GENERAL, SPECIAL,
+INCIDENTAL OR CONSEQUENTIAL DAMAGES ARISING OUT OF THE USE OR INABILITY TO USE THE
+PROGRAM (INCLUDING BUT NOT LIMITED TO LOSS OF DATA OR DATA BEING RENDERED INACCURATE
+OR LOSSES SUSTAINED BY YOU OR THIRD PARTIES OR A FAILURE OF THE PROGRAM TO OPERATE
+WITH ANY OTHER PROGRAMS), EVEN IF SUCH HOLDER OR OTHER PARTY HAS BEEN ADVISED OF THE
+POSSIBILITY OF SUCH DAMAGES.
+
+### 17. Interpretation of Sections 15 and 16
+
+If the disclaimer of warranty and limitation of liability provided above cannot be
+given local legal effect according to their terms, reviewing courts shall apply local
+law that most closely approximates an absolute waiver of all civil liability in
+connection with the Program, unless a warranty or assumption of liability accompanies
+a copy of the Program in return for a fee.
+
+_END OF TERMS AND CONDITIONS_
+
+## How to Apply These Terms to Your New Programs
+
+If you develop a new program, and you want it to be of the greatest possible use to
+the public, the best way to achieve this is to make it free software which everyone
+can redistribute and change under these terms.
+
+To do so, attach the following notices to the program. It is safest to attach them
+to the start of each source file to most effectively state the exclusion of warranty;
+and each file should have at least the “copyright” line and a pointer to
+where the full notice is found.
+
+    <one line to give the program's name and a brief idea of what it does.>
+    Copyright (C) <year>  <name of author>
+
+    This program is free software: you can redistribute it and/or modify
+    it under the terms of the GNU General Public License as published by
+    the Free Software Foundation, either version 3 of the License, or
+    (at your option) any later version.
+
+    This program is distributed in the hope that it will be useful,
+    but WITHOUT ANY WARRANTY; without even the implied warranty of
+    MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+    GNU General Public License for more details.
+
+    You should have received a copy of the GNU General Public License
+    along with this program.  If not, see <http://www.gnu.org/licenses/>.
+
+Also add information on how to contact you by electronic and paper mail.
+
+If the program does terminal interaction, make it output a short notice like this
+when it starts in an interactive mode:
+
+    <program>  Copyright (C) <year>  <name of author>
+    This program comes with ABSOLUTELY NO WARRANTY; for details type 'show w'.
+    This is free software, and you are welcome to redistribute it
+    under certain conditions; type 'show c' for details.
+
+The hypothetical commands `show w` and `show c` should show the appropriate parts of
+the General Public License. Of course, your program's commands might be different;
+for a GUI interface, you would use an “about box”.
+
+You should also get your employer (if you work as a programmer) or school, if any, to
+sign a “copyright disclaimer” for the program, if necessary. For more
+information on this, and how to apply and follow the GNU GPL, see
+&lt;<http://www.gnu.org/licenses/>&gt;.
+
+The GNU General Public License does not permit incorporating your program into
+proprietary programs. If your program is a subroutine library, you may consider it
+more useful to permit linking proprietary applications with the library. If this is
+what you want to do, use the GNU Lesser General Public License instead of this
+License. But first, please read
+&lt;<http://www.gnu.org/philosophy/why-not-lgpl.html>&gt;.

geau/NAMESPACE

+# Generated by roxygen2: do not edit by hand
+
+export(add.inset)
+export(kable_units)

geau/R/add.inset.R

+#' @title Add an inset within a map
+#' 
+#' @param x should be something of type polygon readable by terra::vect
+#' @param scale numeric, how big should be the inset relative to the whole map
+#' @param loc character, vwhere to put the inset
+#' @param background character, color to be used for the background
+#' @param ...  some parameters that will be used by terra::plot
+#'
+#' @return polyVect transformed to be placed somewhere in the map
+#'
+#' @export
+#'
+#' @encoding UTF-8
+#' @author This is an adaptation of the function inset of the terra package.
+#' 
+#' @examples
+#' 
+#' \dontrun{
+#' # To be added (soon)
+#' }
+ 
+add.inset = function (x, scale = 0.2, loc = "", background = "white", ...) 
+{
+    e_usr = terra::ext(graphics::par("usr"))
+
+    x = try(terra::vect(x))
+
+    e = terra::ext(x)
+    r =  (max(c(diff(e_usr[1:2]) / diff(e[1:2]), diff(e_usr[3:4]) / diff(e[3:4]))) * scale)^2
+    y = terra::rescale(x, f = r)
+    e = terra::ext(y)
+
+    if (loc != "") {
+        stopifnot(loc %in% c("bottomright", "bottom", "bottomleft", 
+            "left", "topleft", "top", "topright", "right", "center"))
+        if (grepl("top", loc)) {
+            dy = e_usr[4] - e[4]
+        } else if (grepl("bottom", loc)) {
+            dy = e_usr[3] - e[3]
+        } else {
+            dy = (e_usr[3] + diff(e_usr[3:4])/2) - (e[3] + diff(e[3:4])/2)
+        }
+        if (grepl("left", loc)) {
+            dx = e_usr[1] - e[1]
+        } else if (grepl("right", loc)) {
+            dx = e_usr[2] - e[2]
+        } else {
+            dx = (e_usr[1] + diff(e_usr[1:2])/2) - (e[1] + diff(e[1:2])/2)
+        }
+    } else {
+        dx = e_usr[1] - e[1]
+        dy = e_usr[4] - e[4]
+    }
+
+    y = terra::shift(y, dx, dy)
+    e = terra::ext(y)
+    y = terra::rescale(y, f = .8)
+
+    if (!is.na(background)) {
+        terra::polys(
+            terra::rescale(terra::as.polygons(e), .9),
+            col = background,
+            lty = 1, lwd = 2, border = "lightgray")
+    }
+
+    terra::plot(y, ..., add = TRUE)
+    invisible(y)
+}

geau/R/kable_units.R

+#' @title Replace kable with some useful
+#' 
+#' @param x data.frame or path to a file
+#' @param read function how to read the file
+#' @param align character, 
+#' @param linesep integer, position of linesep
+#' @param ...  some parameters that will be used by other functions
+#'
+#' @return A character vector of the table source code. 
+#'
+#' @export
+#'
+#' @encoding UTF-8
+#' @author This is an adaptation of the function inset of the terra package.
+#' 
+#' @examples
+#' 
+#' temp = head(iris)[c(5, 1:4)]
+#' temp[["Species"]] = as.character(temp[["Species"]])
+#' kable_units(head(temp))
+#' temp = rbind(temp, c(Species = "mean", as.list(colMeans(temp[-1]))))
+#' kable_units(temp, -1)
+#' temp = rbind(temp, c("units", "mm", "mm", "mm", "mm"))
+#' kable_units(temp, -1)
+
+kable_units = function(x, linesep, align = NULL, read = NULL, ...) {
+    if (!is.data.frame(x) && !is.matrix(x)) {
+        if (!is.null(read)) {
+            value = read(x, ...)
+        } else {
+            value = rio::import(x, ...)
+        }
+    } else {
+        value = as.data.frame(x)
+    }
+
+    unit = grep("^[uU]nit", value[, 1])
+
+    if (missing(linesep)) {
+        linesep = ""
+    } else {
+        position = if (is.logical(linesep)) which(linesep) else as.integer(linesep)
+        linesep = rep("", nrow(value))
+        linesep[position[position > 0]] = "\\midrule"
+        linesep[nrow(value) - (length(unit) == 1) + position[position < 0]] = "\\midrule"
+    }
+
+    if(length(unit) == 1) {
+        if (is.null(align)) align = c("l", rep("r", ncol(value) - 1))
+        result = knitr::kable(rbind(value[-unit, ], value[unit, ]), align = align,
+            booktabs = TRUE, format = "latex", row.names = FALSE, linesep = linesep, ...)
+        result = kableExtra::row_spec(result, 0, bold = TRUE, hline_after = FALSE)
+        result = kableExtra::row_spec(result, nrow(value) - 1, extra_latex_after = "\\midrule")
+        result = kableExtra::row_spec(result, nrow(value), italic = TRUE)
+    } else {
+        result = knitr::kable(value, align = align,
+            booktabs = TRUE, format = "latex", row.names = FALSE, linesep = linesep, ...)
+        result = kableExtra::row_spec(result, 0, bold = TRUE, hline_after = FALSE)
+    }
+    return(result)
+}
\ No newline at end of file

geau/man/add.inset.Rd

+% Generated by roxygen2: do not edit by hand
+% Please edit documentation in R/add.inset.R
+\encoding{UTF-8}
+\name{add.inset}
+\alias{add.inset}
+\title{Add an inset within a map}
+\usage{
+add.inset(x, scale = 0.2, loc = "", background = "white", ...)
+}
+\arguments{
+\item{x}{should be something of type polygon readable by terra::vect}
+
+\item{scale}{numeric, how big should be the inset relative to the whole map}
+
+\item{loc}{character, vwhere to put the inset}
+
+\item{background}{character, color to be used for the background}
+
+\item{...}{some parameters that will be used by terra::plot}
+}
+\value{
+polyVect transformed to be placed somewhere in the map
+}
+\description{
+Add an inset within a map
+}
+\examples{
+
+\dontrun{
+# To be added (soon)
+}
+}
+\author{
+This is an adaptation of the function inset of the terra package.
+}

geau/man/kable_units.Rd

+% Generated by roxygen2: do not edit by hand
+% Please edit documentation in R/kable_units.R
+\encoding{UTF-8}
+\name{kable_units}
+\alias{kable_units}
+\title{Replace kable with some useful}
+\usage{
+kable_units(x, linesep, align = NULL, read = NULL, ...)
+}
+\arguments{
+\item{x}{data.frame or path to a file}
+
+\item{linesep}{integer, position of linesep}
+
+\item{align}{character,}
+
+\item{read}{function how to read the file}
+
+\item{...}{some parameters that will be used by other functions}
+}
+\value{
+A character vector of the table source code.
+}
+\description{
+Replace kable with some useful
+}
+\examples{
+
+temp = head(iris)[c(5, 1:4)]
+temp[["Species"]] = as.character(temp[["Species"]])
+kable_units(head(temp))
+temp = rbind(temp, c(Species = "mean", as.list(colMeans(temp[-1]))))
+kable_units(temp, -1)
+temp = rbind(temp, c("units", "mm", "mm", "mm", "mm"))
+kable_units(temp, -1)
+}
+\author{
+This is an adaptation of the function inset of the terra package.
+}