changes in paracou

merge.data.PARACOU.R

@@ -58,14 +58,14 @@ data.paracou <- data.paracou2
 
 ## change unit and names of variables to be the same in all data for the tree 
 data.paracou$G <- 10*(data.paracou$dbh2-data.paracou$dbh1)/data.paracou$year ## diameter growth in mm per year
-data.paracou$G[data.paracou$code1>0] <- NA
-data.paracou$G[data.paracou$code2>0] <- NA
+data.paracou$G[data.paracou$code1>0] <- NA ## indivs with code indicating problem in dbh measurment at dbh1
+data.paracou$G[data.paracou$code2>0] <- NA ## indivs with code indicating problem in dbh measurment at dbh2
 
-data.paracou[which(data.paracou$G < -50),] ## THERE SEEMS TO BE SOME PROBLEMS WITH THE DBH DATA
+data.paracou[which(data.paracou$G < -50),] ## THERE SEEMS TO BE SOME PROBLEMS WITH THE DBH DATA ## much less issue
 data.paracou$D <- data.paracou[["dbh1"]]; data.paracou$D[data.paracou$D == 0] <- NA ;## diameter in cm
 data.paracou$plot <- apply(data.paracou[,c("forest","plot","subplot")],1,paste,collapse=".") ## plot code
 data.paracou$htot <- rep(NA,length(data.paracou[["G"]])) ## height of tree in m - MISSING
-data.paracou$sp.name <- data.paracou$NomVern
+data.paracou$sp.name <- data.paracou$sp
 
 ######################
 ## ECOREGION