ci: solve R CMD check issues

- Missing documentation
- wrong variable
- use x[length(x)] instead of tail(x,1)

Refs #19

R/CreateInputsModel.GRiwrm.R

@@ -26,6 +26,8 @@ CreateInputsModel.GRiwrm <- function(x, DatesR, Precip, PotEvap, Qobs, ...) {
 
 #' Create an empty InputsModel object for **airGRiwrm** nodes
 #'
+#' @param griwrm a `GRiwrm` object (See [GRiwrm])
+#'
 #' @return \emph{GRiwrmInputsModel} empty object
 CreateEmptyGRiwrmInputsModel <- function(griwrm) {
   InputsModel <- list()

R/RunModel.SD.R

@@ -2,7 +2,7 @@
 #'
 #' @inheritParams airGR::RunModel_Lag
 #' @param x `InputsModel` used as `InputsModel` parameter for [airGR::RunModel_Lag]
-#' @param QSimDown a [numeric] corresponding to the runoff of the sub-basin (Typically the `Qsim` outputs of the GR model)
+#' @param QsimDown a [numeric] corresponding to the runoff of the sub-basin (Typically the `Qsim` outputs of the GR model)
 #' @param ... further arguments passed to or from other methods
 #'
 #' @return `OutputsModel` object. See [airGR::RunModel_Lag]

R/RunModel.Supervisor.R

@@ -63,7 +63,7 @@ RunModel.Supervisor <- function(x, RunOptions, Param, ...) {
       Qsim[[id]][x$ts.index] <- x$OutputsModel[[id]]$Qsim
       # Routing Qsim to the downstream node
       if(!is.na(x$InputsModel[[id]]$down)) {
-        x$InputsModel[[x$InputsModel[[id]]$down]]$Qupstream[iTS, i] <-
+        x$InputsModel[[x$InputsModel[[id]]$down]]$Qupstream[iTS, id] <-
           x$OutputsModel[[id]]$Qsim
       }
     }

R/RunModel_Lag.R

@@ -101,8 +101,8 @@ RunModel_Lag <- function(InputsModel, RunOptions, Param) {
 
   if ("StateEnd" %in% RunOptions$Outputs_Sim) {
     OutputsModel$StateEnd$SD <- lapply(seq(NbUpBasins), function(x) {
-      LengthTs <- tail(RunOptions$IndPeriod_Run,1)
-      InputsModel$Qupstream[(LengthTs - floor(PT[x])):LengthTs, x]
+      lastTS <- RunOptions$IndPeriod_Run[length(RunOptions$IndPeriod_Run)]
+      InputsModel$Qupstream[(lastTS - floor(PT[x])):lastTS, x]
     })
     #message("StateEnd: ",paste(OutputsModel$StateEnd$SD, collapse = ", "))
   }

R/utils.R

@@ -87,6 +87,7 @@ doSupervision <- function(supervisor) {
 #'
 #' Stop the execution if an error is detected.
 #'
+#' @param InputsModel a `GRiwrmInputsModel` object (See [CreateInputsModel.GRiwrm])
 #' @param RunOptions a `GRiwrmRunOptions` object (See [CreateRunOptions.GRiwrmInputsModel])
 #' @param Param a [list] of [numeric] containing model parameters of each node of the network
 #'