Principal.java

import BioTex.Execution;
import BuildListToValidate.BuildFilterManyLists;
import Object.CandidatTerm;
import java.io.File;
import java.io.IOException;
import java.util.ArrayList;
import java.util.HashMap;
import org.apache.commons.io.FileUtils;
import org.apache.commons.io.LineIterator;
import java.lang.Integer;

/**
 *
 * @author juanlossio
 */
public class Principal {

    /**
     * @param args the command line arguments
     */
    static ArrayList<CandidatTerm> list_candidat_terms_validated = new ArrayList<CandidatTerm>();

    public static void main(String[] args) throws IOException{


    	System.out.println("Read Configuration");
        HashMap<String,String> mapConf=new HashMap<>();

        File configuration=new File("configuration.txt");
        if(configuration.exists()){
            LineIterator it=FileUtils.lineIterator(configuration);
            while(it.hasNext()){
                String lineConf=it.next();
                String[] sp = lineConf.split("=");
                if(sp.length == 2){
                    mapConf.put(sp[0].trim(), sp[1].trim());
                }
                else{
                    System.err.println("Error: "+lineConf+" is not valid !");
                    System.exit(1);
                }
            }
        }
        else{
            System.out.println("No 'configuration.txt' file found.");
            System.exit(1);
        }
        String[] arr_key=new String[]{"patronNumber","patternsSrc","datasetSrc","stopwordsSrc","treetaggerSrc","typeOfTerms","language","score"};
        boolean flag=false;
        for (String key : arr_key) {
            if (!mapConf.containsKey(key)){
                flag=true;
                System.err.println("Config Var: "+key+" is missing !");
            }
        }
        if(flag){System.exit(1);}

    	/*
    	 * Variables to find: the Pattern List, DataSetReference for Validation, and file where the Tagger Tool is installed
    	 */
    	String source_patterns = mapConf.get("patternsSrc");
    	String source_dataset_reference = mapConf.get("datasetSrc");
    	String source_stop_words = mapConf.get("stopwordsSrc");
    	String source_tagger =mapConf.get("treetaggerSrc");
	int patronNb=Integer.parseInt(mapConf.get("patronNumber"));
//        String basePath="/Users/jacquesfize/Downloads/BioTex";
//    	String source_patterns = basePath+"/patterns";
//    	String source_dataset_reference = basePath+"/dataSetReference";