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advanced_settings.R 5.47 KiB
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# \\\
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# Copyright 2021-2022 Louis Héraut*1,
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#                     Éric Sauquet*2,
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#                     Valentin Mansanarez
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#
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# *1   INRAE, France
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#      louis.heraut@inrae.fr
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# *2   INRAE, France
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#      eric.sauquet@inrae.fr
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#
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# This file is part of ash R toolbox.
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#
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# Ash R toolbox is free software: you can redistribute it and/or
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# modify it under the terms of the GNU General Public License as
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# published by the Free Software Foundation, either version 3 of the
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# License, or (at your option) any later version.
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#
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# Ash R toolbox is distributed in the hope that it will be useful, but
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# WITHOUT ANY WARRANTY; without even the implied warranty of
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# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
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# General Public License for more details.
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#
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# You should have received a copy of the GNU General Public License
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# along with ash R toolbox.
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# If not, see <https://www.gnu.org/licenses/>.
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# ///
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#
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#
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# Rcode/advanced_settings.R
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#
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# Configuration file that regroups different advanced settings about
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# file structure, analyses and plotting.
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## 1. FILE STRUCTURE _________________________________________________
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### 1.1. Input directories ___________________________________________
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# Path to the data
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computer_data_path = file.path(computer_work_path, 'data')
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# Resources directory
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resources_path = file.path(computer_work_path, 'resources')
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if (!(file.exists(resources_path))) {
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  dir.create(resources_path)
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}
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print(paste('resources_path :', resources_path))
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# Logo filename
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logo_dir = 'logo'
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PRlogo_file = 'logo_Prefet_bassin.png'
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AEAGlogo_file = 'agence-de-leau-adour-garonne_logo.png'
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INRAElogo_file = 'Logo-INRAE_Transparent.png'
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FRlogo_file = 'Republique_Francaise_RVB.png'
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shp_dir = 'map'
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# Path to the shapefile for france contour from 'computer_data_path'
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fr_shpdir = file.path(shp_dir, 'france')
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fr_shpname = 'gadm36_FRA_0.shp'
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# Path to the shapefile for basin shape from 'computer_data_path'
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bs_shpdir = file.path(shp_dir, 'bassin')
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bs_shpname = 'BassinHydrographique.shp'
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# Path to the shapefile for sub-basin shape from 'computer_data_path'
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sbs_shpdir = file.path(shp_dir, 'sous_bassin')
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sbs_shpname = 'SousBassinHydrographique.shp'
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# Path to the shapefile for station basins shape from 'computer_data_path'
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cbs_shpdir = file.path(shp_dir, 'bassin_station')
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cbs_shpname = c('BV_4207_stations.shp', '3BVs_FRANCE_L2E_2018.shp')
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cbs_coord = c("L93", "L2")
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# Path to the shapefile for river shape from 'computer_data_path' rv_shpdir = file.path('map', 'river') rv_shpname = 'CoursEau_FXX.shp' ### 1.2. Output directories __________________________________________ # Result directory resdir = file.path(computer_work_path, 'results') if (!(file.exists(resdir))) { dir.create(resdir) } print(paste('resdir :', resdir)) # Figure directory figdir = file.path(computer_work_path, 'figures') if (!(file.exists(figdir))) { dir.create(figdir) } print(paste('figdir :', figdir)) ## 2. STATION SELECTION BY LIST ______________________________________ ### 2.1. Selection with '.docx' file _________________________________ # Path to a '.docx' list file of station that will be analysed DOCXlistdir = "" DOCXlistname = "" # "Liste-station_RRSE.docx" ### 2.2. Selection with '.txt' file _________________________________ # Path to the '.txt' list file of station that will be analysed # It can be generated with : # create_selection(computer_data_path, 'dirname', 'selection.txt') TXTlistdir = "" TXTlistname = "" # "selection.txt" ## 3. ANALYSIS PARAMETERS ____________________________________________ ### 3.1. Station analysis ____________________________________________ to_analyse = c( # 'QA', # 'QMNA', 'VCN10' # 'tDEB', # 'tCEN' ) ### 3.2. Climate analysis ____________________________________________ to_analyse_climate = c( 'PA', 'TA', 'ETPA' ) ### 3.3. Data modification ___________________________________________ # Local corrections of the data df_flag = data.frame( code=c('O3141010', 'O7635010', 'O7635010', 'O7635010', 'O7635010' ), Date=c('1974-07-04',
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'1948-09-06', '1949-02-08', '1950-07-20', '1953-07-22' ), newValue=c(9.5, 4, 3, 1, 3) # /!\ Unit ) # Number of missing continuous days per year before removing the year dayLac_lim = 3 # Maximum continuously missing years before removing everything # before it yearNA_lim = 10 # Sampling span of the data sampleSpan = c('05-01', '11-30') ### 3.4. Saving option _______________________________________________ saving = c( # 'data', 'meta', 'analyse' ) fast_format = TRUE ### 3.5. Statistical option __________________________________________ # The risk of the Mann-Kendall trend detection test alpha = 0.1 allMonth = TRUE ## 4. PLOTTING OPTIONS _______________________________________________ # If the hydrological network needs to be plot show_river = FALSE # Graphical selection of period axis_xlim = NULL # c("1982-01-01", "1983-01-01") # What you want to be plotted for station analyses. For example if 'datasheet' is wrote, datasheet about each stations will be drawn. # All the option are : # 'datasheet' : datasheet of trend analyses for each stations # 'table' : summarizing table about trend analyses # 'map' : map about trend analyses to_plot_station = c( 'datasheet', 'table', 'map' ) map_to_plot = c( 'regime', 'trend', 'mean' )