Dockerfile moringa

docker/moringa/Dockerfile

+FROM gitlab-registry.irstea.fr/raffaele.gaetano/moringa:base-otb-7.0
+LABEL description="A container for the MORINGA processing chain, CIRAD/UMR TETIS"
+
+# Compile obiatools library
+RUN git clone https://gitlab.irstea.fr/raffaele.gaetano/obiatools.git && cd obiatools/Release \
+    && sed -i 's/$HOME\/moringa/\/usr\/local\/lib\/python3.6\/dist-packages/g' configure.sh \
+    && sed -i 's/LIB=python3.6/LIB=python3.6m/g' configure.sh \
+    && mkdir /usr/local/lib/python3.6/dist-packages/sitsproc_c_modules \
+    && touch /usr/local/lib/python3.6/dist-packages/sitsproc_c_modules/__init__.py \
+    && bash -c "source configure.sh && make" && cd ../.. && rm -rf obiatools
+
+# Other python deps: rios, fmask
+RUN pip3 install rios.core \
+    && wget -q https://github.com/ubarsc/python-fmask/releases/download/pythonfmask-0.5.4/python-fmask-0.5.4.tar.gz \
+    && tar -xzf python-fmask-0.5.4.tar.gz && cd python-fmask-0.5.4 \
+    && python3 setup.py install && cd .. && rm -rf python-fmask-*
+ENV RIOS_DFLT_DRIVER="GTiff"
+
+# Default user and directory when running a container, is active now
+RUN useradd -s /bin/bash -m moringa
+USER moringa
+WORKDIR /home/moringa
+
+# Clone peps and theia utils
+RUN git clone -b python3 https://github.com/olivierhagolle/theia_download.git \
+    && git clone https://github.com/olivierhagolle/peps_download.git
+
+# Install Sen2Cor
+RUN wget -q http://step.esa.int/thirdparties/sen2cor/2.8.0/Sen2Cor-02.08.00-Linux64.run \
+    && bash Sen2Cor-02.08.00-Linux64.run && rm Sen2Cor-02.08.00-Linux64.run -f
+
+# Copy all required files from repo
+COPY --chown=moringa aux_data /home/moringa/aux_data
+COPY --chown=moringa *.py *.cfg /home/moringa/
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