ENH: finalizing basic workflow.

Workflows/basic.py

 import os
 import json
 import pickle
-from moringa import preprocess_s2, run_segmentation
+from moringa import fetch, preprocess_s2, run_segmentation
 from Learning.ObjectBased import ObjectBasedClassifier
 from Postprocessing import Report
 
@@ -103,12 +103,15 @@ def basic(cfg, runlevel=1, single_step=False):
         d = json.load(f)
 
     oroot = os.path.join(d['output_path'], d['chain_name'])
+    oside = os.path.join(oroot, '_side')
+    os.makedirs(oside, exist_ok=True)
 
     step = runlevel
 
     # Preprocess timeseries
-    ts_lst_pkl = os.path.join(oroot, 'time_series_list.pkl')
+    ts_lst_pkl = os.path.join(oside, 'time_series_list.pkl')
     if step == 1:
+        print("[MORINGA-INFO] : ***** BEGIN STEP {} *****".format(step))
         process_timeseries(oroot, d, ts_lst_pkl)
         step += 1
         if single_step:
@@ -117,6 +120,7 @@ def basic(cfg, runlevel=1, single_step=False):
     # Segmentation
     seg = os.path.join(oroot, 'segmentation/{}_obj_layer.tif'.format(d['chain_name']))
     if step == 2:
+        print("[MORINGA-INFO] : ***** BEGIN STEP {} *****".format(step))
         perform_segmentation(seg, d)
         step += 1
         if single_step:
@@ -127,6 +131,7 @@ def basic(cfg, runlevel=1, single_step=False):
     for cf in d['ref_db']['fields']:
         m_files.append(os.path.join(oroot, 'model/model_{}.pkl'.format(cf)))
     if step == 3:
+        print("[MORINGA-INFO] : ***** BEGIN STEP {} *****".format(step))
         train_valid_workflow(seg, ts_lst_pkl, d, m_files)
         step += 1
         if single_step:
@@ -137,6 +142,7 @@ def basic(cfg, runlevel=1, single_step=False):
     for cf in d['ref_db']['fields']:
         map_files.append(os.path.join(oroot, 'maps/{}_map_{}.tif'.format(d['chain_name'],cf)))
     if step == 4:
+        print("[MORINGA-INFO] : ***** BEGIN STEP {} *****".format(step))
         classify(seg, ts_lst_pkl, m_files, d, map_files)
         step += 1
         if single_step:
@@ -147,12 +153,8 @@ def basic(cfg, runlevel=1, single_step=False):
     for cf in d['ref_db']['fields']:
         report_fn.append(os.path.join(oroot, 'reports/{}_report_{}.pdf'.format(d['chain_name'],cf)))
     if step == 5:
+        print("[MORINGA-INFO] : ***** BEGIN STEP {} *****".format(step))
         report(map_files, m_files, d, report_fn)
 
+    print("[MORINGA-INFO] : ***** PROCESS FINISHED *****".format(step))
     return
-
-
-
-
-
-