WIP: developing dockerfile.

docker/build-flags-otb.txt

+-DUSE_SYSTEM_BOOST=OFF
+-DUSE_SYSTEM_CURL=OFF
+-DUSE_SYSTEM_EXPAT=OFF
+-DUSE_SYSTEM_FFTW=OFF
+-DUSE_SYSTEM_FREETYPE=OFF
+-DUSE_SYSTEM_GDAL=OFF
+-DUSE_SYSTEM_GEOS=OFF
+-DUSE_SYSTEM_GEOTIFF=OFF
+-DUSE_SYSTEM_GSL=OFF
+-DUSE_SYSTEM_ITK=OFF
+-DUSE_SYSTEM_LIBKML=OFF
+-DUSE_SYSTEM_LIBSVM=OFF
+-DUSE_SYSTEM_MUPARSER=OFF
+-DUSE_SYSTEM_MUPARSERX=OFF
+-DUSE_SYSTEM_OPENCV=OFF
+-DUSE_SYSTEM_PNG=OFF
+-DUSE_SYSTEM_SHARK=OFF
+-DUSE_SYSTEM_TINYXML=OFF
+-DUSE_SYSTEM_ZLIB=OFF
+
+-DOTB_USE_6S=ON
+-DOTB_USE_CURL=ON
+-DOTB_USE_GLEW=OFF
+-DOTB_USE_GLFW=OFF
+-DOTB_USE_GLUT=OFF
+-DOTB_USE_GSL=ON
+-DOTB_USE_LIBKML=OFF
+-DOTB_USE_LIBSVM=ON
+-DOTB_USE_MPI=ON
+-DOTB_USE_MUPARSER=ON
+-DOTB_USE_MUPARSERX=ON
+-DOTB_USE_OPENCV=ON
+-DOTB_USE_OPENGL=OFF
+-DOTB_USE_QT=OFF
+-DOTB_USE_QWT=OFF
+-DOTB_USE_SHARK=ON
+-DOTB_USE_SIFTFAST=ON
+-DOTB_USE_SPTW=ON
+-DOTB_DATA_ROOT=/home/raffaele/otb-root/otb/Data
+-DOTB_USE_OPENMP=ON
+-DOTB_USE_SSE_FLAGS=ON
\ No newline at end of file

docker/dockerfile.otb

+ARG BASE_IMG=ubuntu:20.04
+# Base image can be either focal (20.04) or bionic (18.04) and descendants
+FROM $BASE_IMG
+LABEL description="A base image with OTB and remote modules for the MORINGAv2 platform, CIRAD/UMR TETIS"
+
+WORKDIR /tmp
+
+ARG DEPS_INSTALL_PREFIX=/opt/otb
+
+# Install build dependencies
+RUN apt-get update \
+    && export DEBIAN_FRONTEND=noninteractive \
+    && apt-get install -y --no-install-recommends \
+        bzip2 \
+        cmake \
+        curl \
+        file \
+        g++ \
+        gcc \
+        git \
+        make \
+        nano \
+        patch \
+        pkg-config \
+        python3-dev \
+        python3-numpy \
+        python3-pip \
+        python3-setuptools \
+        python3-sklearn \
+        python3-wheel \
+        swig \
+        unzip \
+        vim \
+        wget \
+        zip \
+    && apt-get clean && rm -rf /var/lib/apt/lists/*
+
+# OTB branch to clone
+ARG OTB_BRANCH=release-8.1
+# Set USE_SYSTEM_* flags
+COPY docker/build-flags-otb.txt .
+
+# SuperBuild OTB
+RUN mkdir /tmp/SuperBuild-archives /tmp/build /opt/otb \
+    && git clone --single-branch -b $OTB_BRANCH "https://gitlab.orfeo-toolbox.org/orfeotoolbox/otb.git" \
+    && cd SuperBuild-archives \
+    && OTB_VERSION=$(head -n1 /tmp/otb/RELEASE_NOTES.txt | sed -r 's/OTB-v ([0-9].[0-9]).[0-9] -.*/\1/') \
+    && curl -s "https://www.orfeo-toolbox.org/packages/archives/OTB/SuperBuild-archives-$OTB_VERSION.tar.bz2" \
+        | tar -xjv --exclude 'q*' --exclude '*gl*'
+
+RUN cd /tmp/build \
+    && OTB_CMAKE_FLAGS=$(cat "../build-flags-otb.txt") \
+    && cmake /tmp/otb/SuperBuild \
+        $OTB_CMAKE_FLAGS \
+        -DCMAKE_BUILD_TYPE="Release" \
+        -DDOWNLOAD_LOCATION=/tmp/SuperBuild-archives \
+        -DCMAKE_INSTALL_PREFIX=/opt/otb \
+    && make OTB_DEPENDS -j12
+
+RUN cd /tmp/otb/Modules/Remote \
+    && rm -f otbGRM.remote.cmake \
+    && git clone "https://gitlab.irstea.fr/remi.cresson/GRM.git" \
+    && git clone -b disassembled "https://gitlab.irstea.fr/remi.cresson/LSGRM.git" \
+    && git clone "https://gitlab.irstea.fr/raffaele.gaetano/otbVectorClassification.git" \
+    && git clone "https://gitlab.irstea.fr/raffaele.gaetano/otbSelectiveHaralickTextures.git" \
+    && git clone "https://gitlab.irstea.fr/remi.cresson/TimeSeriesUtils.git" \
+    && git clone "https://gitlab.irstea.fr/remi.cresson/TemporalSmoothing.git" \
+    && git clone -b no_gapfilling "https://gitlab.irstea.fr/remi.cresson/NDVITimeSeries.git" \
+    && git clone -b all_in_one_app "https://framagit.org/iota2-project/otbPointMatchCoregistrationModel.git" \
+    && git clone "https://gitlab.orfeo-toolbox.org/remote_modules/otb-slic.git" \
+    && cd /tmp/build/OTB/build \
+    && cmake /tmp/otb \
+        -DModule_otbGRM=ON \
+        -DModule_LSGRM=ON \
+        -DModule_OTBAppSelectiveHaralickTextures=ON \
+        -DModule_OTBAppVectorFeaturesStatistics=ON \
+        -DModule_OTBTemporalGapFilling=ON \
+        -DModule_S1TilingSupportApplications=ON \
+        -DModule_NDVITimeSeries=ON \
+        -DModule_OTBPhenology=ON \
+        -DModule_TemporalSmoothing=ON \
+        -DModule_TimeSeriesUtils=ON \
+        -DModule_OTBAppPointMatchCoregistration=ON \
+        -DModule_OTBSLIC=ON \
+        -DModule_DiapOTBModule=OFF \
+        -DModule_OTBBioVars=OFF \
+        -DModule_OTBFFSforGMM=OFF \
+        -DModule_SertitObject=OFF \
+        -DOTB_WRAP_PYTHON=ON \
+        -DPYTHON_EXECUTABLE=/usr/bin/python3 \
+        -DCMAKE_INSTALL_PREFIX=/opt/otb \
+    && cd /tmp/build \
+    && make -j12 \
+    && rm -rf /tmp/* /root/.cache /opt/otb/bin/otbgui_*
+
+# Persistent environment variables
+ENV PATH="/opt/otb/bin:$PATH"
+ENV PYTHONPATH="/opt/otb/lib/python3/dist-packages:/opt/otb/lib/otb/python:$PYTHONPATH"
+ENV LD_LIBRARY_PATH="/opt/otb/lib:$LD_LIBRARY_PATH"
+ENV OTB_APPLICATION_PATH="/opt/otb/lib/otb/applications"
+ENV PROJ_LIB="$DEPS_INSTALL_PREFIX/share/proj"
+ENV GDAL_DATA="$DEPS_INSTALL_PREFIX/share/gdal"