REFAC: KWStyle

app/otbLSGRM.cxx

@@ -10,7 +10,7 @@
 #include "itkFixedArray.h"
 #include "itkImageSource.h"
 
-// GRM
+// LSGRM
 #include <iostream>
 #include "lsgrmBaatzSegmenter.h"
 #include "lsgrmSpringSegmenter.h"
@@ -44,9 +44,6 @@ public:
   typedef lsgrm::BaatzSegmenter<ImageType>              BaatzSegmenterType;
   typedef lsgrm::SpringSegmenter<ImageType>             SpringSegmenterType;
   typedef lsgrm::FullLambdaScheduleSegmenter<ImageType> FLSSegmenterType;
-  typedef lsgrm::Controller<BaatzSegmenterType>         BaatzControllerType;
-  typedef lsgrm::Controller<SpringSegmenterType>        SpringControllerType;
-  typedef lsgrm::Controller<FLSSegmenterType>           FLSControllerType;
 
 private:
 
@@ -69,8 +66,8 @@ private:
   void DoInit()
   {
     SetName("GenericRegionMerging");
-    SetDescription("This application allows to use the Generic Region Merging library "
-        "(GRM) and provides currently 3 homogeneity criteria: Euclidean Distance, "
+    SetDescription("This application allows to use the Large Scale Generic Region Merging library "
+        "(LSGRM) and provides currently 3 homogeneity criteria: Euclidean Distance, "
         "Full Lambda Schedule and Baatz & Schape criterion.");
 
     // Input and Output images
@@ -114,7 +111,6 @@ private:
   {
   }
 
-
   /*
    * Return a prefix for temporary files
    */
@@ -143,9 +139,16 @@ private:
   /*
    * This function sets the generic parameters of a controller and runs the segmentation
    */
-  template<class TController>
-  UInt32ImageType::Pointer SetGenericParametersAndRunSegmentation(typename TController::Pointer& controller)
-  {
+  template<class TSegmenter>
+  UInt32ImageType::Pointer SetGenericParametersAndRunSegmentation(const typename TSegmenter::ParamType params){
+
+    // Instantiate the controller
+    typedef typename lsgrm::Controller<TSegmenter> ControlerType;
+    typename ControlerType::Pointer controller = ControlerType::New();
+
+    // Set specific parameters
+    controller->SetSpecificParameters(params);
+
     // Set input image
     controller->SetInputImage(GetParameterFloatVectorImage("in"));
 
@@ -195,8 +198,6 @@ private:
     return controller->GetLabeledClusteredOutput();
   }
 
-
-
   void DoExecute()
   {
     /*
@@ -214,33 +215,20 @@ private:
     int inputCriterion = GetParameterInt("criterion");
     if (inputCriterion == CRITERION_BAATZ)
       {
-      // Baatz controller
-      BaatzControllerType::Pointer baatzController = BaatzControllerType::New();
-
-      // Specific parameters
       grm::BaatzParam params;
       params.m_SpectralWeight = GetParameterFloat("criterion.bs.cw");
       params.m_ShapeWeight = GetParameterFloat("criterion.bs.sw");
-      baatzController->SetSpecificParameters(params);
-
-      // Run segmentation
-      labelImage = SetGenericParametersAndRunSegmentation<BaatzControllerType>(baatzController);
+      labelImage = SetGenericParametersAndRunSegmentation<BaatzSegmenterType>(params);
       }
     else if (inputCriterion == CRITERION_SPRING)
       {
-      // Spring controller
-      SpringControllerType::Pointer springController = SpringControllerType::New();
-
-      // Run segmentation
-      labelImage = SetGenericParametersAndRunSegmentation<SpringControllerType>(springController);
+      grm::SpringParam params;
+      labelImage = SetGenericParametersAndRunSegmentation<SpringSegmenterType>(params);
       }
     else if (inputCriterion == CRITERION_FLS)
       {
-      // Full Lambda Schedule (FLS) controller
-      FLSControllerType::Pointer flsController = FLSControllerType::New();
-
-      // Run segmentation
-      labelImage = SetGenericParametersAndRunSegmentation<FLSControllerType>(flsController);
+      grm::FLSParam params;
+      labelImage = SetGenericParametersAndRunSegmentation<FLSSegmenterType>(params);
       }
     else
       {
@@ -253,7 +241,6 @@ private:
     labelImage->SetSpacing(inputImage->GetSpacing());
     SetParameterOutputImage<UInt32ImageType>("out", labelImage);
 
-
   }
 
   void AfterExecuteAndWriteOutputs()
@@ -275,6 +262,4 @@ private:
 } // end of namespace wrapper
 } // end of namespace otb
 
-
 OTB_APPLICATION_EXPORT(otb::Wrapper::LSGRM)
-

include/lsgrmBaatzSegmenter.txx

@@ -6,56 +6,56 @@
 namespace lsgrm
 {
 
-	template<class TImage>
-	void
-	BaatzSegmenter<TImage>::WriteSpecificAttributes(NodePointerType node, FILE * nodeStream)
-	{
-	  std::size_t bands = node->m_Means.size();
-	  fwrite(&(bands), sizeof(bands), 1, nodeStream);
-
-	  for(unsigned int b = 0; b < node->m_Means.size(); b++)
-	    {
-	    fwrite(&(node->m_Means[b]), sizeof(node->m_Means[b]), 1, nodeStream);
-	    fwrite(&(node->m_SquareMeans[b]), sizeof(node->m_SquareMeans[b]), 1, nodeStream);
-	    fwrite(&(node->m_SpectralSum[b]), sizeof(node->m_SpectralSum[b]), 1, nodeStream);
-	    fwrite(&(node->m_Std[b]), sizeof(node->m_Std[b]), 1, nodeStream);
-	    }
-	}
-
-    template<class TImage>
-    void
-    BaatzSegmenter<TImage>::ReadSpecificAttributes(NodePointerType node, FILE * nodeStream)
+template<class TImage>
+void
+BaatzSegmenter<TImage>::WriteSpecificAttributes(NodePointerType node, FILE * nodeStream)
+{
+  std::size_t bands = node->m_Means.size();
+  fwrite(&(bands), sizeof(bands), 1, nodeStream);
+
+  for(unsigned int b = 0; b < node->m_Means.size(); b++)
     {
-      std::size_t bands;
-      fread(&(bands), sizeof(bands), 1, nodeStream);
-      node->m_Means.assign(bands, 0);
-      node->m_SquareMeans.assign(bands, 0);
-      node->m_SpectralSum.assign(bands, 0);
-      node->m_Std.assign(bands, 0);
-
-      for(unsigned int b = 0; b < bands; b++)
-        {
-        fread(&(node->m_Means[b]), sizeof(node->m_Means[b]), 1, nodeStream);
-        fread(&(node->m_SquareMeans[b]), sizeof(node->m_SquareMeans[b]), 1, nodeStream);
-        fread(&(node->m_SpectralSum[b]), sizeof(node->m_SpectralSum[b]), 1, nodeStream);
-        fread(&(node->m_Std[b]), sizeof(node->m_Std[b]), 1, nodeStream);
-        }
+    fwrite(&(node->m_Means[b]), sizeof(node->m_Means[b]), 1, nodeStream);
+    fwrite(&(node->m_SquareMeans[b]), sizeof(node->m_SquareMeans[b]), 1, nodeStream);
+    fwrite(&(node->m_SpectralSum[b]), sizeof(node->m_SpectralSum[b]), 1, nodeStream);
+    fwrite(&(node->m_Std[b]), sizeof(node->m_Std[b]), 1, nodeStream);
     }
+}
 
-    template<class TImage>
-    long long unsigned int
-    BaatzSegmenter<TImage>::GetNodeMemory(NodePointerType &node)
+template<class TImage>
+void
+BaatzSegmenter<TImage>::ReadSpecificAttributes(NodePointerType node, FILE * nodeStream)
+{
+  std::size_t bands;
+  fread(&(bands), sizeof(bands), 1, nodeStream);
+  node->m_Means.assign(bands, 0);
+  node->m_SquareMeans.assign(bands, 0);
+  node->m_SpectralSum.assign(bands, 0);
+  node->m_Std.assign(bands, 0);
+
+  for(unsigned int b = 0; b < bands; b++)
     {
+    fread(&(node->m_Means[b]), sizeof(node->m_Means[b]), 1, nodeStream);
+    fread(&(node->m_SquareMeans[b]), sizeof(node->m_SquareMeans[b]), 1, nodeStream);
+    fread(&(node->m_SpectralSum[b]), sizeof(node->m_SpectralSum[b]), 1, nodeStream);
+    fread(&(node->m_Std[b]), sizeof(node->m_Std[b]), 1, nodeStream);
+    }
+}
 
-      unsigned int nBands = node->m_Means.size(); //this->m_InputImage->GetNumberOfComponentsPerPixel();
+template<class TImage>
+long long unsigned int
+BaatzSegmenter<TImage>::GetNodeMemory(NodePointerType &node)
+{
 
-      long long unsigned int memory = 0;
-      memory += sizeof(NodePointerType);    // size of the node pointer
-      memory += sizeof(NodeType);           // size of the node (actually, size of the base node)
-      memory += 4 * nBands * sizeof(float); // size of the 4 attributes, multiplied by the nb. of bands
-      memory += node->m_Edges.size() * sizeof(EdgeType);  // size of the edges
-      return memory;
-    }
+  unsigned int nBands = node->m_Means.size(); //this->m_InputImage->GetNumberOfComponentsPerPixel();
+
+  long long unsigned int memory = 0;
+  memory += sizeof(NodePointerType);    // size of the node pointer
+  memory += sizeof(NodeType);           // size of the node (actually, size of the base node)
+  memory += 4 * nBands * sizeof(float); // size of the 4 attributes, multiplied by the nb. of bands
+  memory += node->m_Edges.size() * sizeof(EdgeType);  // size of the edges
+  return memory;
+}
 } // end of namespace lsrm
 
 #endif

include/lsgrmController.txx

@@ -108,10 +108,6 @@ void Controller<TSegmenter>::RunSegmentation()
         {
         numberOfIterationsRemaining -= numberOfIterationsForPartialSegmentations;
         }
-      else
-        {
-        isFusion = false;
-        }
 
 #ifdef OTB_USE_MPI
       // Gathering useful variables
@@ -152,11 +148,21 @@ void Controller<TSegmenter>::RunSegmentation()
       itkExceptionMacro(<< "No more possible fusions, but can not store the output graph");
       }
     }
-  else // tiling_mode is none
+  else if (m_TilingMode == LSGRM_TILING_NONE)// tiling_mode is none
     {
-    // todo use classic grm
+    // Use classic grm
+    TSegmenter segmenter;
+    segmenter.SetParam(m_SpecificParameters);
+    segmenter.SetThreshold(m_Threshold);
+    segmenter.SetDoFastSegmentation(true);
+    segmenter.SetNumberOfIterations(m_NumberOfIterations);
+    segmenter.SetInput(m_InputImage);
+    segmenter.Update();
+    }
+  else
+    {
+    itkExceptionMacro(<<"Unknow tiling mode!");
     }
-
 
 }
 

include/lsgrmFullLambdaScheduleSegmenter.txx

@@ -6,47 +6,47 @@
 namespace lsgrm
 {
 
-	template<class TImage>
-	void
-	FullLambdaScheduleSegmenter<TImage>::WriteSpecificAttributes(NodePointerType node, FILE * nodeStream)
-	{
-	  std::size_t bands = node->m_Means.size();
-	  fwrite(&(bands), sizeof(bands), 1, nodeStream);
-
-	  for(unsigned int b = 0; b < node->m_Means.size(); b++)
-	    {
-	    fwrite(&(node->m_Means[b]), sizeof(node->m_Means[b]), 1, nodeStream);
-	    }
-	}
-
-    template<class TImage>
-    void
-    FullLambdaScheduleSegmenter<TImage>::ReadSpecificAttributes(NodePointerType node, FILE * nodeStream)
+template<class TImage>
+void
+FullLambdaScheduleSegmenter<TImage>::WriteSpecificAttributes(NodePointerType node, FILE * nodeStream)
+{
+  std::size_t bands = node->m_Means.size();
+  fwrite(&(bands), sizeof(bands), 1, nodeStream);
+
+  for(unsigned int b = 0; b < node->m_Means.size(); b++)
     {
-      std::size_t bands;
-      fread(&(bands), sizeof(bands), 1, nodeStream);
-      node->m_Means.assign(bands, 0);
-
-      for(unsigned int b = 0; b < bands; b++)
-        {
-        fread(&(node->m_Means[b]), sizeof(node->m_Means[b]), 1, nodeStream);
-        }
+    fwrite(&(node->m_Means[b]), sizeof(node->m_Means[b]), 1, nodeStream);
     }
+}
+
+template<class TImage>
+void
+FullLambdaScheduleSegmenter<TImage>::ReadSpecificAttributes(NodePointerType node, FILE * nodeStream)
+{
+  std::size_t bands;
+  fread(&(bands), sizeof(bands), 1, nodeStream);
+  node->m_Means.assign(bands, 0);
 
-    template<class TImage>
-    long long unsigned int
-    FullLambdaScheduleSegmenter<TImage>::GetNodeMemory(NodePointerType &node)
+  for(unsigned int b = 0; b < bands; b++)
     {
+    fread(&(node->m_Means[b]), sizeof(node->m_Means[b]), 1, nodeStream);
+    }
+}
+
+template<class TImage>
+long long unsigned int
+FullLambdaScheduleSegmenter<TImage>::GetNodeMemory(NodePointerType &node)
+{
 
-      unsigned int nBands = node->m_Means.size(); //this->m_InputImage->GetNumberOfComponentsPerPixel();
+  unsigned int nBands = node->m_Means.size(); //this->m_InputImage->GetNumberOfComponentsPerPixel();
 
-      long long unsigned int memory = 0;
-      memory += sizeof(NodePointerType);    // size of the node pointer
-      memory += sizeof(NodeType);           // size of the node (actually, size of the base node)
-      memory += 1 * nBands * sizeof(float); // size of the 1 attribute, multiplied by the nb. of bands
-      memory += node->m_Edges.size() * sizeof(EdgeType);  // size of the edges
-      return memory;
-    }
+  long long unsigned int memory = 0;
+  memory += sizeof(NodePointerType);    // size of the node pointer
+  memory += sizeof(NodeType);           // size of the node (actually, size of the base node)
+  memory += 1 * nBands * sizeof(float); // size of the 1 attribute, multiplied by the nb. of bands
+  memory += node->m_Edges.size() * sizeof(EdgeType);  // size of the edges
+  return memory;
+}
 } // end of namespace lsrm
 
 #endif

include/lsgrmGraphOperations.txx

@@ -661,14 +661,14 @@ long long unsigned int RunFirstPartialSegmentation(
         // and write them to the stability margin
         std::cout << "\tComputing stability margin..." << std::endl;
         {
-          std::unordered_map<typename TSegmenter::NodePointerType, unsigned int> borderNodeMap;
+        std::unordered_map<typename TSegmenter::NodePointerType, unsigned int> borderNodeMap;
 
-          DetectBorderNodes<TSegmenter>(segmenter.m_Graph, currentTile,
-              borderNodeMap, imageWidth, imageHeight);
+        DetectBorderNodes<TSegmenter>(segmenter.m_Graph, currentTile,
+            borderNodeMap, imageWidth, imageHeight);
 
-          ExtractStabilityMargin<TSegmenter>(borderNodeMap, numberOfNeighborLayers);
+        ExtractStabilityMargin<TSegmenter>(borderNodeMap, numberOfNeighborLayers);
 
-          WriteStabilityMargin<TSegmenter>(borderNodeMap, currentTile.nodeMarginFileName, currentTile.edgeMarginFileName);
+        WriteStabilityMargin<TSegmenter>(borderNodeMap, currentTile.nodeMarginFileName, currentTile.edgeMarginFileName);
         }
         }
       } // for each col

include/lsgrmGraphToOtbImage.h

@@ -14,26 +14,26 @@
 
 namespace lsgrm
 {
-	template<class TGraph>
-	class GraphToOtbImage
-	{
-	public:
-		
-		/* Some convenient typedefs */
-		typedef TGraph GraphType;
-		typedef typename GraphType::NodeType NodeType;
-		typedef std::vector< std::shared_ptr<NodeType> > NodeList;
-		typedef typename NodeList::const_iterator NodeConstIterator;
-		typedef unsigned int LabelPixelType;
-		typedef otb::Image<LabelPixelType, 2> LabelImageType;
-		using ContourOperator = lp::ContourOperations;
-		
+template<class TGraph>
+class GraphToOtbImage
+{
+public:
+
+  /* Some convenient typedefs */
+  typedef TGraph GraphType;
+  typedef typename GraphType::NodeType NodeType;
+  typedef std::vector< std::shared_ptr<NodeType> > NodeList;
+  typedef typename NodeList::const_iterator NodeConstIterator;
+  typedef unsigned int LabelPixelType;
+  typedef otb::Image<LabelPixelType, 2> LabelImageType;
+  using ContourOperator = lp::ContourOperations;
+
+
+  LabelImageType::Pointer GetLabelImage(const GraphType& graph,
+      const unsigned int width,
+      const unsigned int height);
+};
 
-		LabelImageType::Pointer GetLabelImage(const GraphType& graph,
-											  const unsigned int width,
-											  const unsigned int height);
-	};
-	
 } // end of namespace lsrm
 #include "lsgrmGraphToOtbImage.txx"
 #endif

include/lsgrmGraphToOtbImage.txx

@@ -6,70 +6,70 @@
 
 namespace lsgrm
 {
-	template<class TGraph>
-	typename GraphToOtbImage<TGraph>::LabelImageType::Pointer
-	GraphToOtbImage<TGraph>::GetLabelImage(const GraphType& graph,
-										   const unsigned int width,
-										   const unsigned int height)
-	{
-		LabelImageType::IndexType labelImageRegionStart;
-		LabelImageType::SizeType labelImageRegionSize;
-		LabelImageType::RegionType labelImageRegion;
+template<class TGraph>
+typename GraphToOtbImage<TGraph>::LabelImageType::Pointer
+GraphToOtbImage<TGraph>::GetLabelImage(const GraphType& graph,
+    const unsigned int width,
+    const unsigned int height)
+    {
+  LabelImageType::IndexType labelImageRegionStart;
+  LabelImageType::SizeType labelImageRegionSize;
+  LabelImageType::RegionType labelImageRegion;
 
-		labelImageRegionStart[0] = 0; labelImageRegionStart[1] = 0;
-		labelImageRegionSize[0] = width; labelImageRegionSize[1] = height;
-		labelImageRegion.SetIndex(labelImageRegionStart);
-		labelImageRegion.SetSize(labelImageRegionSize);
+  labelImageRegionStart[0] = 0; labelImageRegionStart[1] = 0;
+  labelImageRegionSize[0] = width; labelImageRegionSize[1] = height;
+  labelImageRegion.SetIndex(labelImageRegionStart);
+  labelImageRegion.SetSize(labelImageRegionSize);
 
-		LabelImageType::Pointer label_img = LabelImageType::New();
-		label_img->SetRegions(labelImageRegion);
-		label_img->Allocate();
+  LabelImageType::Pointer label_img = LabelImageType::New();
+  label_img->SetRegions(labelImageRegion);
+  label_img->Allocate();
 
-		using LabelImageIterator = itk::ImageRegionIterator<LabelImageType>;
-		LabelImageIterator it(label_img, label_img->GetLargestPossibleRegion());
-		for(it.GoToBegin();!it.IsAtEnd(); ++it)
-			it.Set(0);
-		
-		// Start at 1 (value 0 can be used for invalid pixels)
-		LabelImageType::InternalPixelType label = 1;
-		for(auto& region : graph.m_Nodes)
-		{
-			lp::CellLists borderPixels;
-			ContourOperator::GenerateBorderCells(borderPixels, region->m_Contour, region->m_Id, width);
-			
-			for (auto& pix: borderPixels)
-			{
-				labelImageRegionStart[0] = pix % width;
-				labelImageRegionStart[1] = pix / width;
-				label_img->SetPixel(labelImageRegionStart, label);
-			}
-			++label;
-		}
+  using LabelImageIterator = itk::ImageRegionIterator<LabelImageType>;
+  LabelImageIterator it(label_img, label_img->GetLargestPossibleRegion());
+  for(it.GoToBegin();!it.IsAtEnd(); ++it)
+    it.Set(0);
 
-        // Sort labels in their appearance order from left->right to top->bottom
-		const LabelImageType::InternalPixelType noDataLabel = 0;
-        vnl_vector<LabelImageType::InternalPixelType> lut(label,noDataLabel);
-        label=1;
-        for(it.GoToBegin();!it.IsAtEnd(); ++it)
-          {
-          unsigned int inputLabel = it.Get();
-          if (lut[ inputLabel ] == noDataLabel)
-            {
-            lut[ inputLabel ] = label;
-            label++;
-            }
-          }
-        for(it.GoToBegin();!it.IsAtEnd(); ++it)
-          it.Set(lut[it.Get()]);
+  // Start at 1 (value 0 can be used for invalid pixels)
+  LabelImageType::InternalPixelType label = 1;
+  for(auto& region : graph.m_Nodes)
+    {
+    lp::CellLists borderPixels;
+    ContourOperator::GenerateBorderCells(borderPixels, region->m_Contour, region->m_Id, width);
+
+    for (auto& pix: borderPixels)
+      {
+      labelImageRegionStart[0] = pix % width;
+      labelImageRegionStart[1] = pix / width;
+      label_img->SetPixel(labelImageRegionStart, label);
+      }
+    ++label;
+    }
+
+  // Sort labels in their appearance order from left->right to top->bottom
+  const LabelImageType::InternalPixelType noDataLabel = 0;
+  vnl_vector<LabelImageType::InternalPixelType> lut(label,noDataLabel);
+  label=1;
+  for(it.GoToBegin();!it.IsAtEnd(); ++it)
+    {
+    unsigned int inputLabel = it.Get();
+    if (lut[ inputLabel ] == noDataLabel)
+      {
+      lut[ inputLabel ] = label;
+      label++;
+      }
+    }
+  for(it.GoToBegin();!it.IsAtEnd(); ++it)
+    it.Set(lut[it.Get()]);
+
+  // Fill holes
+  typedef itk::GrayscaleFillholeImageFilter<LabelImageType,LabelImageType>  FillholeFilterType;
+  FillholeFilterType::Pointer fillFilter = FillholeFilterType::New();
+  fillFilter->SetInput(label_img);
+  fillFilter->Update();
+
+  return fillFilter->GetOutput();
+    }
 
-        // Fill holes
-		typedef itk::GrayscaleFillholeImageFilter<LabelImageType,LabelImageType>  FillholeFilterType;
-		FillholeFilterType::Pointer fillFilter = FillholeFilterType::New();
-		fillFilter->SetInput(label_img);
-		fillFilter->Update();
-		
-		return fillFilter->GetOutput();
-	}
-		
 } // end of namespace lsrm
 #endif

include/lsgrmSplitter.txx

@@ -4,10 +4,10 @@ namespace lsgrm
 {
 
 enum RelativePosition{
-POS_TOP,
-POS_RIGHT,
-POS_BOTTOM,
-POS_LEFT
+  POS_TOP,
+  POS_RIGHT,
+  POS_BOTTOM,
+  POS_LEFT
 };
 
 enum NeighborhoodRelativePosition{
@@ -29,7 +29,7 @@ std::vector<ProcessingTile> SplitOTBImage(TInputImage * imagePtr, // input image
     unsigned int &nbTilesX,
     unsigned int &nbTilesY,
     std::string temporaryFilesPrefix)
-{
+    {
 
   std::vector<ProcessingTile> tiles;
 
@@ -173,5 +173,5 @@ std::vector<ProcessingTile> SplitOTBImage(TInputImage * imagePtr, // input image
     } // for(unsigned int row = 0; row < nbTilesY; ++row)
 
   return tiles;
-}
+    }
 } // end of namespace lsgrm

include/lsgrmSpringSegmenter.txx

@@ -6,47 +6,47 @@
 namespace lsgrm
 {
 
-	template<class TImage>
-	void
-	SpringSegmenter<TImage>::WriteSpecificAttributes(NodePointerType node, FILE * nodeStream)
-	{
-	  std::size_t bands = node->m_Means.size();
-	  fwrite(&(bands), sizeof(bands), 1, nodeStream);
-
-	  for(unsigned int b = 0; b < node->m_Means.size(); b++)
-	    {
-	    fwrite(&(node->m_Means[b]), sizeof(node->m_Means[b]), 1, nodeStream);
-	    }
-	}
-
-    template<class TImage>
-    void
-    SpringSegmenter<TImage>::ReadSpecificAttributes(NodePointerType node, FILE * nodeStream)
+template<class TImage>
+void
+SpringSegmenter<TImage>::WriteSpecificAttributes(NodePointerType node, FILE * nodeStream)
+{
+  std::size_t bands = node->m_Means.size();
+  fwrite(&(bands), sizeof(bands), 1, nodeStream);
+
+  for(unsigned int b = 0; b < node->m_Means.size(); b++)
     {
-      std::size_t bands;
-      fread(&(bands), sizeof(bands), 1, nodeStream);
-      node->m_Means.assign(bands, 0);
-
-      for(unsigned int b = 0; b < bands; b++)
-        {
-        fread(&(node->m_Means[b]), sizeof(node->m_Means[b]), 1, nodeStream);
-        }
+    fwrite(&(node->m_Means[b]), sizeof(node->m_Means[b]), 1, nodeStream);
     }
+}
+
+template<class TImage>
+void
+SpringSegmenter<TImage>::ReadSpecificAttributes(NodePointerType node, FILE * nodeStream)
+{
+  std::size_t bands;
+  fread(&(bands), sizeof(bands), 1, nodeStream);
+  node->m_Means.assign(bands, 0);
 
-    template<class TImage>
-    long long unsigned int
-    SpringSegmenter<TImage>::GetNodeMemory(NodePointerType &node)
+  for(unsigned int b = 0; b < bands; b++)
     {
+    fread(&(node->m_Means[b]), sizeof(node->m_Means[b]), 1, nodeStream);
+    }
+}
+
+template<class TImage>
+long long unsigned int
+SpringSegmenter<TImage>::GetNodeMemory(NodePointerType &node)
+{
 
-      unsigned int nBands = node->m_Means.size(); //this->m_InputImage->GetNumberOfComponentsPerPixel();
+  unsigned int nBands = node->m_Means.size(); //this->m_InputImage->GetNumberOfComponentsPerPixel();
 
-      long long unsigned int memory = 0;
-      memory += sizeof(NodePointerType);    // size of the node pointer
-      memory += sizeof(NodeType);           // size of the node (actually, size of the base node)
-      memory += 1 * nBands * sizeof(float); // size of the 1 attribute, multiplied by the nb. of bands
-      memory += node->m_Edges.size() * sizeof(EdgeType);  // size of the edges
-      return memory;
-    }
+  long long unsigned int memory = 0;
+  memory += sizeof(NodePointerType);    // size of the node pointer
+  memory += sizeof(NodeType);           // size of the node (actually, size of the base node)
+  memory += 1 * nBands * sizeof(float); // size of the 1 attribute, multiplied by the nb. of bands