Merge branch 'develop' into 'master'

Release 4.2.2

See merge request !105

.gitlab-ci.yml

 variables:
-  OTBTF_VERSION: 4.2.1
+  OTBTF_VERSION: 4.2.2
   OTB_BUILD: /src/otb/build/OTB/build  # Local OTB build directory
   OTBTF_SRC: /src/otbtf  # Local OTBTF source directory
   OTB_TEST_DIR: $OTB_BUILD/Testing/Temporary  # OTB testing directory
@@ -211,6 +211,12 @@ geos_enabled:
   script:
     - python -m pytest --junitxml=$ARTIFACT_TEST_DIR/report_geos_enabled.xml $OTBTF_SRC/test/geos_test.py
 
+planetary_computer:
+  extends: .applications_test_base
+  script:
+    - pip install pystac_client planetary_computer
+    - python -m pytest --junitxml=$ARTIFACT_TEST_DIR/report_pc_enabled.xml $OTBTF_SRC/test/pc_test.py
+
 imports:
   extends: .applications_test_base
   script:

Dockerfile

@@ -98,7 +98,7 @@ RUN cd tensorflow \
 ### OTB
 
 ARG GUI=false
-ARG OTB=8.1.2
+ARG OTB=d74ab47d4308591db4ed5a5ea3b820cef73a39fe
 ARG OTBTESTS=false
 
 RUN mkdir /src/otb

RELEASE_NOTES.txt

+Version 4.2.2 (19 oct 2023)
+----------------------------------------------------------------
+* Add a test to ensure that planetary computer works in the OTBTF docker image
+* Move to OTB version d74ab47d4308591db4ed5a5ea3b820cef73a39fe since 8.2.1 looks not up-to-date
+
 Version 4.2.1 (5 oct 2023)
 ----------------------------------------------------------------
 * Fix a bug occuring when input images origins were not sharing the same pixel grid

doc/docker_use.md

@@ -25,12 +25,12 @@ Since OTBTF >= 3.2.1 you can find the latest docker images on
 
 | Name                                                                               | Os            | TF    | OTB   | Description            | Dev files | Compute capability |
 |------------------------------------------------------------------------------------| ------------- |-------|-------| ---------------------- | --------- | ------------------ |
-| **mdl4eo/otbtf:4.2.1-cpu**                                                         | Ubuntu Jammy  | r2.12 | 8.1.2 | CPU, no optimization   | no        | 5.2,6.1,7.0,7.5,8.6|
-| **mdl4eo/otbtf:4.2.1-cpu-dev**                                                     | Ubuntu Jammy  | r2.12 | 8.1.2 | CPU, no optimization (dev) |  yes  | 5.2,6.1,7.0,7.5,8.6|
-| **mdl4eo/otbtf:4.2.1-gpu**                                                         | Ubuntu Jammy  | r2.12 | 8.1.2 | GPU, no optimization   | no        | 5.2,6.1,7.0,7.5,8.6|
-| **mdl4eo/otbtf:4.2.1-gpu-dev**                                                     | Ubuntu Jammy  | r2.12 | 8.1.2 | GPU, no optimization (dev) | yes   | 5.2,6.1,7.0,7.5,8.6|
-| **gitlab.irstea.fr/remi.cresson/otbtf/container_registry/otbtf:4.2.1-gpu-opt**     | Ubuntu Jammy  | r2.12 | 8.1.2 | GPU with opt.          | no        | 5.2,6.1,7.0,7.5,8.6|
-| **gitlab.irstea.fr/remi.cresson/otbtf/container_registry/otbtf:4.2.1-gpu-opt-dev** | Ubuntu Jammy  | r2.12 | 8.1.2 | GPU with opt. (dev)    | yes       | 5.2,6.1,7.0,7.5,8.6|
+| **mdl4eo/otbtf:4.2.2-cpu**                                                         | Ubuntu Jammy  | r2.12 | d74ab | CPU, no optimization   | no        | 5.2,6.1,7.0,7.5,8.6|
+| **mdl4eo/otbtf:4.2.2-cpu-dev**                                                     | Ubuntu Jammy  | r2.12 | d74ab | CPU, no optimization (dev) |  yes  | 5.2,6.1,7.0,7.5,8.6|
+| **mdl4eo/otbtf:4.2.2-gpu**                                                         | Ubuntu Jammy  | r2.12 | d74ab | GPU, no optimization   | no        | 5.2,6.1,7.0,7.5,8.6|
+| **mdl4eo/otbtf:4.2.2-gpu-dev**                                                     | Ubuntu Jammy  | r2.12 | d74ab | GPU, no optimization (dev) | yes   | 5.2,6.1,7.0,7.5,8.6|
+| **gitlab.irstea.fr/remi.cresson/otbtf/container_registry/otbtf:4.2.2-gpu-opt**     | Ubuntu Jammy  | r2.12 | d74ab | GPU with opt.          | no        | 5.2,6.1,7.0,7.5,8.6|
+| **gitlab.irstea.fr/remi.cresson/otbtf/container_registry/otbtf:4.2.2-gpu-opt-dev** | Ubuntu Jammy  | r2.12 | d74ab | GPU with opt. (dev)    | yes       | 5.2,6.1,7.0,7.5,8.6|
 
 The list of older releases is available [here](#older-images).
 
@@ -178,4 +178,10 @@ Here you can find the list of older releases of OTBTF:
 | **mdl4eo/otbtf:4.2.0-gpu-dev**                                                     | Ubuntu Jammy  | r2.12 | 8.1.0 | GPU, no optimization (dev) | yes   | 5.2,6.1,7.0,7.5,8.6|
 | **gitlab.irstea.fr/remi.cresson/otbtf/container_registry/otbtf:4.2.0-gpu-opt**     | Ubuntu Jammy  | r2.12 | 8.1.0 | GPU with opt.          | no        | 5.2,6.1,7.0,7.5,8.6|
 | **gitlab.irstea.fr/remi.cresson/otbtf/container_registry/otbtf:4.2.0-gpu-opt-dev** | Ubuntu Jammy  | r2.12 | 8.1.0 | GPU with opt. (dev)    | yes       | 5.2,6.1,7.0,7.5,8.6|
+| **mdl4eo/otbtf:4.2.1-cpu**                                                         | Ubuntu Jammy  | r2.12 | 8.1.2 | CPU, no optimization   | no        | 5.2,6.1,7.0,7.5,8.6|
+| **mdl4eo/otbtf:4.2.1-cpu-dev**                                                     | Ubuntu Jammy  | r2.12 | 8.1.2 | CPU, no optimization (dev) |  yes  | 5.2,6.1,7.0,7.5,8.6|
+| **mdl4eo/otbtf:4.2.1-gpu**                                                         | Ubuntu Jammy  | r2.12 | 8.1.2 | GPU, no optimization   | no        | 5.2,6.1,7.0,7.5,8.6|
+| **mdl4eo/otbtf:4.2.1-gpu-dev**                                                     | Ubuntu Jammy  | r2.12 | 8.1.2 | GPU, no optimization (dev) | yes   | 5.2,6.1,7.0,7.5,8.6|
+| **gitlab.irstea.fr/remi.cresson/otbtf/container_registry/otbtf:4.2.1-gpu-opt**     | Ubuntu Jammy  | r2.12 | 8.1.2 | GPU with opt.          | no        | 5.2,6.1,7.0,7.5,8.6|
+| **gitlab.irstea.fr/remi.cresson/otbtf/container_registry/otbtf:4.2.1-gpu-opt-dev** | Ubuntu Jammy  | r2.12 | 8.1.2 | GPU with opt. (dev)    | yes       | 5.2,6.1,7.0,7.5,8.6|
 

doc/index.md

@@ -99,6 +99,7 @@ Every one can **contribute** to OTBTF. Just open a PR :)
 
 ## Additional resources
 
+- The [otbtf/keras tutorial](https://github.com/remicres/otbtf_keras_tutorial) shows how to create a dataset, build, train, evaluate, and apply a model to perform semantic segmentation of a remote sensing image,
 - The [*test* folder](https://github.com/remicres/otbtf/tree/master/test/) 
 of this repository contains various use-cases with commands, python codes, and 
 input/baseline data,

setup.py

@@ -6,7 +6,7 @@ with open("README.md", "r", encoding="utf-8") as fh:
 
 setuptools.setup(
     name="otbtf",
-    version="4.2.1",
+    version="4.2.2",
     author="Remi Cresson",
     author_email="remi.cresson@inrae.fr",
     description="OTBTF: Orfeo ToolBox meets TensorFlow",

test/pc_test.py

+#!/usr/bin/env python3
+# -*- coding: utf-8 -*-
+import pytest
+import unittest
+import planetary_computer
+import pystac_client
+import otbApplication
+
+class PCTest(unittest.TestCase):
+
+    def test_pc(self):
+        api = pystac_client.Client.open(
+            'https://planetarycomputer.microsoft.com/api/stac/v1',
+            modifier=planetary_computer.sign_inplace,
+        )
+
+        res = api.search(
+            bbox=[4, 42.99, 4.5, 43.05], 
+            datetime=["2022-01-01", "2022-01-09"],
+            collections=["sentinel-2-l2a"]
+        )
+
+        r = next(res.items())
+        url = r.assets["B04"].href
+        info = otbApplication.Registry.CreateApplication("ReadImageInfo")
+        info.SetParameterString("in", "/vsicurl/" + url)
+        info.Execute()
+        assert len(info.GetParameterString("projectionref")) > 1
+
+
+if __name__ == '__main__':
+    unittest.main()

tools/docker/build-deps-gui.txt

@@ -10,4 +10,4 @@ libxi-dev
 qtbase5-dev
 qttools5-dev
 qttools5-dev-tools
-xvfb
\ No newline at end of file
+xvfb

tools/docker/build-flags-otb.txt

@@ -17,12 +17,3 @@
 -DUSE_SYSTEM_TINYXML=ON
 -DUSE_SYSTEM_ZLIB=ON
 -DUSE_SYSTEM_SWIG=ON
-
--DOTB_USE_QT=OFF
--DOTB_USE_OPENGL=OFF
--DOTB_USE_GLUT=OFF
--DOTB_USE_GLEW=OFF
--DOTB_USE_GLFW=OFF
-
--DGDAL_SB_EXTRA_OPTIONS=--with-geos
-