Grid.java

package pikelake;

import java.io.File;
import java.io.FileNotFoundException;
import java.util.ArrayList;
import java.util.List;
import java.util.Scanner;
import java.util.StringTokenizer;

import pikelake.Cell;
import pikelake.environment.AreaMovement;
import pikelake.environment.FichierMarnage;
import pikelake.environment.Time;
import pikelake.pikes.Pike;
import fr.cemagref.simaqualife.extensions.spatial2D.Grid2D;
import fr.cemagref.simaqualife.kernel.AquaNismsGroup;
import fr.cemagref.simaqualife.kernel.util.TransientParameters.InitTransientParameters;
import fr.cemagref.simaqualife.pilot.Pilot;

public class Grid extends Grid2D<Cell, Individual> {

	//public Time temp = new Time();
	private String marnageInit = "513_4";
	
    public Grid(int gridWidth, int gridHeight, NeighborsType neighborsType) {
        super(gridWidth, gridHeight, neighborsType);
        // TODO Auto-generated constructor stub
    }

    /**
     *	Declaration + Initialisation de la grille avec les HSI de chaque cellule 
     *	
     */
    @InitTransientParameters
    public void initTransientParameters(Pilot pilot) throws FileNotFoundException {
    	
        StringTokenizer sLigne;
        @SuppressWarnings("unused")
		double hsiStd = 0, hsiMoy = 0;
		int idCell = 0, yPike = 0, xPike = 0;
        
    	// Initialisation grille vide
        grid = new Cell[gridWidth * gridHeight];
        
        // Initialisation de toute la grille avec hsi = -1
    	for (int cptCell = 0; cptCell < (gridWidth * gridHeight - 1); cptCell++) {
    		grid[cptCell] = new Cell(cptCell, -1);
 	    }
    	
    	try {
    		marnageInit = FichierMarnage.calculMarnage();
    	} catch (NullPointerException e) {
    		//System.out.println ("Err marnage");
    		marnageInit = "513_4";
    	}
    	
        // Lecture fichier contenant les HSI de toutes les mailles
    	String filePath = "data/input/HSI/hsi_BRO" + Time.getSeason() + marnageInit + ".txt";
    	Scanner scanner = new Scanner(new File(filePath));

    	// Initialisation de chaque cellule contenant HSI
    	// On boucle sur chaque ligne detecte
    	String line = scanner.nextLine();
    	while (scanner.hasNextLine()) {
    		line = scanner.nextLine();		

    		// Decoupage ligne : id, hsiStd, hsiMoy
    		sLigne = new StringTokenizer (line);
    		if (sLigne.hasMoreTokens())
    			idCell = Integer.parseInt(sLigne.nextToken())-1;