An error occurred while loading the file. Please try again.
-
rpi2.0 authored367c4a57
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
290
291
292
293
294
295
296
297
298
299
300
301
302
303
304
305
306
307
308
309
310
311
312
313
314
315
316
317
318
319
320
321
322
323
324
325
326
327
328
329
330
331
332
333
334
335
336
337
338
339
340
341
342
343
344
345
346
347
348
349
350
351
352
353
354
355
356
357
358
359
360
361
362
363
364
365
366
367
368
369
370
371
372
373
374
375
376
377
378
379
380
381
382
383
384
385
386
387
388
389
390
391
392
393
394
395
396
397
398
399
400
401
402
403
404
405
406
407
408
409
410
411
412
413
414
415
416
417
418
419
420
421
422
423
424
425
426
427
428
429
430
431
432
433
434
435
436
437
438
439
440
441
442
443
444
445
446
447
448
449
450
451
452
453
454
455
456
457
458
459
460
461
462
463
464
465
466
467
468
469
470
471
472
473
474
475
476
477
478
479
480
481
482
483
484
485
486
487
488
489
490
491
492
493
494
495
496
497
498
499
500
501
502
503
504
505
506
507
508
509
510
511
512
513
514
515
516
517
518
519
520
521
522
523
524
525
526
527
528
529
530
531
532
533
534
535
536
537
538
539
540
541
542
543
544
545
546
547
548
549
550
551
552
553
554
555
556
557
558
559
560
561
562
563
564
565
566
567
568
569
570
571
572
573
574
575
576
577
578
579
580
581
582
583
584
585
586
587
588
589
590
591
592
593
594
595
596
597
598
599
600
601
602
603
604
605
606
607
608
609
610
611
612
613
614
615
616
617
618
619
620
621
622
623
624
625
626
627
628
629
630
631
632
633
634
635
636
637
638
639
640
641
642
643
644
645
646
647
648
649
650
651
652
653
654
655
656
657
658
659
660
661
662
663
664
665
666
667
668
669
670
671
672
673
674
675
676
677
678
679
680
681
682
683
684
685
686
687
688
689
690
691
692
693
694
695
696
697
698
699
700
701
702
703
704
705
706
707
708
709
710
711
712
713
714
715
716
717
718
719
720
721
722
# AdisTS.py -- Pamhyr
# Copyright (C) 2023-2024 INRAE
#
# This program is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation, either version 3 of the License, or
# (at your option) any later version.
#
# This program is distributed in the hope that it will be useful,
# but WITHOUT ANY WARRANTY; without even the implied warranty of
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
# GNU General Public License for more details.
#
# You should have received a copy of the GNU General Public License
# along with this program. If not, see <https://www.gnu.org/licenses/>.
# -*- coding: utf-8 -*-
import os, glob
import logging
from http.cookiejar import reach
import numpy as np
import shutil
from tools import (
trace, timer, logger_exception,
timestamp_to_old_pamhyr_date,
old_pamhyr_date_to_timestamp,
timestamp_to_old_pamhyr_date_adists
)
from Solver.CommandLine import CommandLineSolver
from Model.Results.ResultsAdisTS import Results
from Model.Results.River.River import River, Reach, Profile
from Checker.Adists import (
AdistsOutputKpChecker,
)
logger = logging.getLogger()
def adists_file_open(filepath, mode):
f = open(filepath, mode)
if "w" in mode:
# Write header
comment = "*"
if ".ST" in filepath:
comment = "#"
f.write(
f"{comment} " +
"This file is generated by PAMHYR, please don't modify\n"
)
return f
class AdisTS(CommandLineSolver):
_type = "adists"
def __init__(self, name):
super(AdisTS, self).__init__(name)
self._type = "adists"
self._cmd_input = ""
self._cmd_solver = "@path @input -o @output"
self._cmd_output = ""
@classmethod
def default_parameters(cls):
lst = super(AdisTS, cls).default_parameters()
lst += [
("adists_implicitation_parameter", "0.5"),
("adists_timestep_screen", "60"),
("adists_timestep_bin", "60"),
("adists_timestep_csv", "60"),
("adists_timestep_mage", "60"),
("adists_initial_concentration", "60"),
]
return lst
@classmethod
def checkers(cls):
lst = [
AdistsOutputKpChecker(),
]
return lst
def cmd_args(self, study):
lst = super(AdisTS, self).cmd_args(study)
return lst
def input_param(self):
name = self._study.name
return f"{name}.REP"
def log_file(self):
name = self._study.name
return f"{name}.TRA"
def _export_REP_additional_lines(self, study, rep_file):
lines = filter(
lambda line: line.is_enabled(),
study.river.rep_lines.lines
)
for line in lines:
rep_file.write(line.line)
def _export_REP(self, study, repertory, mage_rep, files, qlog, name="0"):
if qlog is not None:
qlog.put("Export REP file")
# Write header
with adists_file_open(
os.path.join(
repertory, f"{name}.REP"
), "w+"
) as f:
f.write(f"NET ../{mage_rep}/{name}.NET\n")
f.write(f"REP ../{mage_rep}/{name}.REP\n")
for file in files:
EXT = file.split('.')[1]
f.write(f"{EXT} {file}\n")
self._export_REP_additional_lines(study, f)
path_mage_net = os.path.join(os.path.abspath(os.path.join(repertory, os.pardir)), f"{mage_rep}/net")
path_adists_net = os.path.join(repertory, "net")
if os.path.exists(path_mage_net):
shutil.copytree(path_mage_net, path_adists_net, dirs_exist_ok=True)
@timer
def export(self, study, repertory, qlog=None):
self._study = study
name = study.name.replace(" ", "_")
self.export_additional_files(study, repertory, qlog, name=name)
return True
###########
# RESULTS #
###########
def read_bin(self, study, repertory, results, qlog=None, name="0"):
return
@timer
def results(self, study, repertory, qlog=None, name="0"):
results = Results(
study=study,
solver=self,
repertory=repertory,
name=name,
)
self.read_bin(study, repertory, results, qlog, name=name)
return results
def output_param(self):
name = ""
return f"{name}"
################################
# Adis-TS in low coupling mode #
################################
class AdisTSlc(AdisTS):
_type = "adistslc"
def __init__(self, name):
super(AdisTSlc, self).__init__(name)
self._type = "adistslc"
@classmethod
def default_parameters(cls):
lst = super(AdisTSlc, cls).default_parameters()
# Insert new parameters at specific position
names = list(map(lambda t: t[0], lst))
return lst
##########
# Export #
##########
def cmd_args(self, study):
lst = super(AdisTSlc, self).cmd_args(study)
return lst
def _export_POLs(self, study, repertory, qlog=None, name="0"):
files = []
if qlog is not None:
qlog.put("Export POLS files")
pollutants = study.river.Pollutants.Pollutants_List
for pollutant in pollutants:
name = pollutant.name
with adists_file_open(os.path.join(repertory, f"{name}.POL"), "w+") as f:
files.append(f"{name}.POL")
f.write(f"*Polluant A contaminé aux PCB\n")
f.write(f"name = {name}\n")
self._export_POL_Characteristics(study, pollutant._data, f, qlog)
POL_ICs = next(filter(lambda ic: ic.pollutant == pollutant.id,\
study.river.initial_conditions_adists.Initial_Conditions_List))
if POL_ICs.concentration != None:
f.write(f"file_ini = {name}.INI\n")
self._export_ICs_AdisTS(study, repertory, POL_ICs, qlog, name)
POL_BCs = list(filter(lambda bc: bc.pollutant == pollutant.id,\
study.river.boundary_conditions_adists.BCs_AdisTS_List))
if len(POL_BCs) != 0:
f.write(f"file_cl = {name}.CDT\n")
self._export_BCs_AdisTS(study, repertory, POL_BCs, qlog, name)
POL_LAT_Cont = list(filter(lambda lc: lc.pollutant == pollutant.id,\
study.river.lateral_contributions_adists.Lat_Cont_List))
if len(POL_LAT_Cont) != 0:
f.write(f"file_ald = {name}.ALD\n")
f.write(f"*\n")
self._export_Lat_AdisTS(study, repertory, POL_LAT_Cont, qlog, name)
return files
def _export_Lat_AdisTS(self, study, repertory, POL_LC, qlog, POL_name):
if qlog is not None:
qlog.put("Export POL LCs files")
with adists_file_open(os.path.join(repertory, f"{POL_name}.ALD"), "w+") as f:
for LC in POL_LC:
reach_name = next(filter(lambda edge: edge.id == LC.edge, study.river.edges())).name
f.write(f"${reach_name} {LC.begin_kp} {LC.end_kp}\n")
f.write(f"*temps |débit massique (kg/s)\n")
f.write(f"*---------++++++++++\n")
for LC_data in LC._data:
f.write(f"{timestamp_to_old_pamhyr_date_adists(int(LC_data[0]))} {LC_data[1]}\n")
f.write(f"*\n")
return True
def _export_BCs_AdisTS(self, study, repertory, POL_BC, qlog, POL_name):
if qlog is not None:
qlog.put("Export POL BCs files")
with adists_file_open(os.path.join(repertory, f"{POL_name}.CDT"), "w+") as f:
for BC in POL_BC:
node_name = next(filter(lambda x: x.id == BC.node, study.river._nodes)).name
f.write(f"${node_name}\n")
if BC.type == "Concentration":
f.write(f"*temps |concentration\n")
f.write(f"*JJ:HH:MM | (g/L)\n")
f.write(f"*---------++++++++++\n")
else:
f.write(f"*temps |rate\n")
f.write(f"*JJ:HH:MM | (kg/s)\n")
f.write(f"*---------++++++++++\n")
for BC_data in BC._data:
f.write(f"{timestamp_to_old_pamhyr_date_adists(int(BC_data[0]))} {BC_data[1]}\n")
f.write(f"*\n")
return True
def _export_ICs_AdisTS(self, study, repertory, POL_IC_default, qlog, POL_name):
if qlog is not None:
qlog.put("Export POL ICs files")
with adists_file_open(os.path.join(repertory, f"{POL_name}.INI"), "w+") as f:
f.write(f"*État initial pour le polluant {POL_name}\n")
f.write(f"{POL_IC_default.name} = {POL_IC_default.concentration} {POL_IC_default.eg} "+
f"{POL_IC_default.em} {POL_IC_default.ed}\n")
if len(POL_IC_default._data) != 0:
self._export_ICs_AdisTS_Spec(study, POL_IC_default._data, f, qlog)
def _export_ICs_AdisTS_Spec(self, study, pol_ics_spec_data, f, qlog, name="0"):
for ic_spec in pol_ics_spec_data:
f.write(f"{ic_spec.name} = {ic_spec.reach} {ic_spec.start_kp} {ic_spec.end_kp} " +
f"{ic_spec.concentration} {ic_spec.eg} {ic_spec.em} {ic_spec.ed} {ic_spec.rate}")
return True
def _export_POL_Characteristics(self, study, pol_data, f, qlog, name="0"):
list_characteristics = ["type", "diametre", "rho", "porosity", "cdc_riv", "cdc_cas", "apd", "ac", "bc"]
if len(list_characteristics) == (len(pol_data[0])-1):
for l in range(len(list_characteristics)):
f.write(f"{list_characteristics[l]} = {pol_data[0][l]}\n")
def _export_D90(self, study, repertory, qlog=None, name="0"):
files = []
if qlog is not None:
qlog.put("Export D90 file")
with adists_file_open(os.path.join(repertory, f"{name}.D90"), "w+") as f:
files.append(f"{name}.D90")
f.write(f"*Diamètres caractéristiques du fond stable\n")
d90AdisTS = study.river.d90_adists.D90_AdisTS_List
f.write(f"{d90AdisTS[0].name} = {d90AdisTS[0].d90}\n")
self._export_d90_spec(study, d90AdisTS[0]._data, f, qlog)
return files
def _export_d90_spec(self, study, d90_spec_data, f, qlog, name="0"):
for d90_spec in d90_spec_data:
if (d90_spec.name is None) or (d90_spec.reach is None) or (d90_spec.start_kp is None) or \
(d90_spec.end_kp is None) or (d90_spec.d90 is None):
return
edges = study.river.enable_edges()
id_edges = list(map(lambda x: x.id, edges))
id_reach = d90_spec.reach
if id_reach not in id_edges:
return
f.write(f"{d90_spec.name} = {id_reach} {d90_spec.start_kp} {d90_spec.end_kp} {d90_spec.d90}\n")
def _export_DIF(self, study, repertory, qlog=None, name="0"):
files = []
if qlog is not None:
qlog.put("Export DIF file")
with adists_file_open(os.path.join(repertory, f"{name}.DIF"), "w+") as f:
files.append(f"{name}.DIF")
f.write(f"*Définition des paramètres des fonctions de calcul du\n")
f.write(f"*coefficient de diffusion\n")
difAdisTS = study.river.dif_adists.DIF_AdisTS_List
if difAdisTS[0].method != "generique":
f.write(f"defaut = {difAdisTS[0].method} {difAdisTS[0].dif }\n")
else:
f.write(f"defaut = {difAdisTS[0].method} {difAdisTS[0].dif} {difAdisTS[0].b} {difAdisTS[0].c}\n")
self._export_dif_spec(study, difAdisTS[0]._data, f, qlog)
return files
def _export_dif_spec(self, study, dif_spec_data, f, qlog, name="0"):
for dif_spec in dif_spec_data:
if (dif_spec.reach is None) or (dif_spec.start_kp is None) or \
(dif_spec.end_kp is None) or (dif_spec.dif is None) or (dif_spec.b is None) or (dif_spec.c is None):
return
edges = study.river.enable_edges()
id_edges = list(map(lambda x: x.id, edges))
id_reach = dif_spec.reach
if id_reach not in id_edges:
return
if dif_spec.method != "generique":
f.write(f"{dif_spec.method} = {id_reach} {dif_spec.start_kp} {dif_spec.end_kp} {dif_spec.dif}\n")
else:
f.write(f"{dif_spec.method} = {id_reach} {dif_spec.start_kp} {dif_spec.end_kp} {dif_spec.dif}" +
f"{dif_spec.b} {dif_spec.c}\n")
def _export_NUM(self, study, repertory, qlog=None, name="0"):
dict_names = {"init_time":"start_date",
"final_time":"end_date",
"timestep":"dt0",
"implicitation_parameter":"theta",
"timestep_screen":"dtscr",
"timestep_bin":"dtbin",
"timestep_csv":"dtcsv",
"timestep_mage":"dtMage",
"initial_concentration":"c_initiale"}
files = []
if qlog is not None:
qlog.put("Export NUM file")
with adists_file_open(os.path.join(repertory, f"{name}.NUM"), "w+") as f:
files.append(f"{name}.NUM")
params = study.river.get_params(self.type).parameters
for p in params:
name = p.name\
.replace("all_", "")\
.replace("adists_", "")
value = p.value
logger.debug(
f"export: NUM: {name}: {value} ({p.value})"
)
if name != "command_line_arguments":
f.write(f"{dict_names[name]} = {value}\n")
outputkps = study.river.Output_kp_adists.OutputKp_List
for outputkp in outputkps:
self._export_outputkp(study, outputkp, f, qlog)
return files
def _export_outputkp(self, study, outputkp, f, qlog, name="0"):
if (outputkp.reach is None) or (outputkp.kp is None) or (outputkp.title is None):
return
edges = study.river.enable_edges()
id_edges = list(map(lambda x: x.id, edges))
id_reach = outputkp.reach
kp = outputkp.kp
title = outputkp.title
if id_reach not in id_edges:
return
f.write(f"output = {id_reach} {kp} {title}\n")
@timer
def read_bin(self, study, repertory, results, qlog=None, name="0"):
repertory_results = os.path.join(repertory, "resultats")
files_bin_names = [el.split("/")[-1] for el in glob.glob(repertory_results+"/*.bin")]
print("files names resultats: ", files_bin_names)
ifilename = os.path.join(repertory_results, files_bin_names[0])
logger.info(f"read_bin: Start reading '{ifilename}' ...")
print("reading ", ifilename)
with open(ifilename, 'rb') as f:
# header
# first line
data = np.fromfile(f, dtype=np.int32, count=1) # line length (bytes) (start)
data = np.fromfile(f, dtype=np.int32, count=3)
ibmax = data[0] # number of reaches
ismax = data[1] # total number of cross sections
kbl = data[2] * -1 # block size for .BIN header
data = np.fromfile(f, dtype=np.int32, count=1) # line length (bytes) (end)
# second line
data = np.fromfile(f, dtype=np.int32, count=1) # line length (bytes) (start)
ibu = np.fromfile(f, dtype=np.int32, count=ibmax)
data = np.fromfile(f, dtype=np.int32, count=1) # line length (bytes) (end)
# third line
data = np.fromfile(f, dtype=np.int32, count=1) # line length (bytes) (start)
data = np.fromfile(f, dtype=np.int32, count=2 * ibmax)
is1 = np.zeros(ibmax, dtype=np.int32)
is2 = np.zeros(ibmax, dtype=np.int32)
print("nombre de biefs : ", ibmax)
logger.debug(f"read_bin: nb_reach = {ibmax}")
logger.debug(f"read_bin: nb_profile = {ismax}")
results.set("nb_reach", f"{ibmax}")
results.set("nb_profile", f"{ismax}")
reachs = []
iprofiles = {}
reach_offset = {}
for i in range(ibmax):
# Add results reach to reach list
r = results.river.add(i)
reachs.append(r)
is1[i] = data[2 * i] - 1 # first section of reach i (FORTRAN numbering)
is2[i] = data[2 * i + 1] - 1 # last section of reach i (FORTRAN numbering)
key = (is1[i], is2[i])
iprofiles[key] = r
reach_offset[r] = is1[i]
logger.debug(f"read_bin: iprofiles = {iprofiles}")
data = np.fromfile(f, dtype=np.int32, count=1) # line length (bytes) (end)
# fourth line
pk = np.zeros(ismax, dtype=np.float32)
for k in range(0, ismax, kbl):
data = np.fromfile(f, dtype=np.int32, count=1) # line length (bytes) (start)
pk[k:min(k + kbl, ismax)] = np.fromfile(f, dtype=np.float32, count=min(k + kbl, ismax) - k)
print("pk : ", pk)
data = np.fromfile(f, dtype=np.int32, count=1) # line length (bytes) (end)
# fifth line (useless)
data = np.fromfile(f, dtype=np.int32, count=1) # line length (bytes) (start)
zmin_OLD = np.fromfile(f, dtype=np.float32, count=1)[0]
print("zmin_OLD : ", zmin_OLD)
data = np.fromfile(f, dtype=np.int32, count=1) # line length (bytes) (end)
# sixth line
zf = np.zeros(ismax, dtype=np.float32)
z = np.zeros(ismax * 3, dtype=np.float32)
for k in range(0, ismax, kbl):
data = np.fromfile(f, dtype=np.int32, count=1) # line length (bytes) (start)
z[3 * k:3 * min(k + kbl, ismax)] = np.fromfile(f, dtype=np.float32,
count=3 * (min(k + kbl, ismax) - k))
# z[i*3+1] and z[i*3+2] are useless
data = np.fromfile(f, dtype=np.int32, count=1) # line length (bytes) (end)
zf = [z[i * 3] for i in range(ismax)]
print("zf : ", zf)
# seventh line (useless)
for k in range(0, ismax, kbl):
data = np.fromfile(f, dtype=np.int32, count=1) # line length (bytes) (start)
zero = np.fromfile(f, dtype=np.int32, count=ismax)
print("zero : ", zero)
data = np.fromfile(f, dtype=np.int32, count=1) # line length (bytes) (end)
# end header
def ip_to_r(i): return iprofiles[
next(
filter(
lambda k: k[0] <= i <= k[1],
iprofiles
)
)
]
def ip_to_ri(r, i): return i - reach_offset[r]
path_files = map(lambda file: os.path.join(repertory_results, file), files_bin_names)
data_tmp = {}
for file_bin in path_files:
key_pol = file_bin.split("/")[-1][0:-4]
data_tmp[key_pol] = {}
with open(file_bin, 'rb') as f:
# header
# first line
data = np.fromfile(f, dtype=np.int32, count=1) # line length (bytes) (start)
data = np.fromfile(f, dtype=np.int32, count=3)
ibmax = data[0] # number of reaches
ismax = data[1] # total number of cross sections
kbl = data[2] * -1 # block size for .BIN header
data = np.fromfile(f, dtype=np.int32, count=1) # line length (bytes) (end)
# second line
data = np.fromfile(f, dtype=np.int32, count=1) # line length (bytes) (start)
ibu = np.fromfile(f, dtype=np.int32, count=ibmax)
data = np.fromfile(f, dtype=np.int32, count=1) # line length (bytes) (end)
# third line
data = np.fromfile(f, dtype=np.int32, count=1) # line length (bytes) (start)
data = np.fromfile(f, dtype=np.int32, count=2 * ibmax)
is1 = np.zeros(ibmax, dtype=np.int32)
is2 = np.zeros(ibmax, dtype=np.int32)
for i in range(ibmax):
is1[i] = data[2 * i] # first section of reach i (FORTRAN numbering)
is2[i] = data[2 * i + 1] # last section of reach i (FORTRAN numbering)
data = np.fromfile(f, dtype=np.int32, count=1) # line length (bytes) (end)
# fourth line
pk = np.zeros(ismax, dtype=np.float32)
for k in range(0, ismax, kbl):
data = np.fromfile(f, dtype=np.int32, count=1) # line length (bytes) (start)
pk[k:min(k + kbl, ismax)] = np.fromfile(f, dtype=np.float32, count=min(k + kbl, ismax) - k)
data = np.fromfile(f, dtype=np.int32, count=1) # line length (bytes) (end)
# fifth line (useless)
data = np.fromfile(f, dtype=np.int32, count=1) # line length (bytes) (start)
zmin_OLD = np.fromfile(f, dtype=np.float32, count=1)[0]
data = np.fromfile(f, dtype=np.int32, count=1) # line length (bytes) (end)
# sixth line
zf = np.zeros(ismax, dtype=np.float32)
z = np.zeros(ismax * 3, dtype=np.float32)
for k in range(0, ismax, kbl):
data = np.fromfile(f, dtype=np.int32, count=1) # line length (bytes) (start)
z[3 * k:3 * min(k + kbl, ismax)] = np.fromfile(f, dtype=np.float32,
count=3 * (min(k + kbl, ismax) - k))
# z[i*3+1] and z[i*3+2] are useless
data = np.fromfile(f, dtype=np.int32, count=1) # line length (bytes) (end)
zf = [z[i * 3] for i in range(ismax)]
# seventh line (useless)
for k in range(0, ismax, kbl):
data = np.fromfile(f, dtype=np.int32, count=1) # line length (bytes) (start)
zero = np.fromfile(f, dtype=np.int32, count=ismax)
data = np.fromfile(f, dtype=np.int32, count=1) # line length (bytes) (end)
# end header
# data
data = np.fromfile(f, dtype=np.int32, count=1) # line length (bytes) (start)
while data.size > 0:
ismax = np.fromfile(f, dtype=np.int32, count=1)[0]
t = np.fromfile(f, dtype=np.float64, count=1)[0]
if not t in data_tmp[key_pol]:
data_tmp[key_pol][t] = {}
c = np.fromfile(f, dtype=np.byte, count=1)
# possible values :
# sediment : C, G, M, D, L, N, R
# polutant : C, G, M, D
phys_var = bytearray(c).decode()
data_tmp[key_pol][t][phys_var] = {}
real_data = np.fromfile(f, dtype=np.float32, count=ismax)
data = np.fromfile(f, dtype=np.int32, count=1) # line length (bytes) (end)
data_tmp[key_pol][t][phys_var] = real_data
data = np.fromfile(f, dtype=np.int32, count=1) # line length (bytes) (start)
# end data
print(data_tmp["AAA-silt"])
pollutants_keys = list(data_tmp.keys())
timestamps_keys = list(data_tmp[pollutants_keys[0]].keys())
phys_data_names = list(data_tmp[pollutants_keys[0]][timestamps_keys[0]].keys())
print("pol keys: ", pollutants_keys)
print("t keys: ", timestamps_keys)
print("phys var: ", phys_data_names)
#print("set timestamps keys: ", set(timestamps_keys))
#print("isma")
print("iprofiles: ", iprofiles)
pi_tmp = []
reach_tmp = []
for i in range(ismax):
#print("first i: ", i)
reach = ip_to_r(i)
reach_tmp.append(reach)
#print("reach i:", reach)
#print("second i: ", i)
p_i = ip_to_ri(reach, i)
pi_tmp.append(p_i)
for t_data in timestamps_keys:
pol_view = []
for pol in pollutants_keys:
#print("pol results: ", type(list(data_tmp[pol][t_data].values())))
pol_view.append(tuple(list(data_tmp[pol][t_data].values())))
#reach.set(p_i, t_data, "pols", pol_view)
print("pi_tmp: ", pi_tmp)
print("pol view: ", pol_view)
print("reach from i: ", reach_tmp)
#print("pol view: ", pol_view)
#print("results: ", results)
#results.set("timestamps", set(timestamps_keys))
#print("------------------------set timestamps results meta data: ", set(timestamps_keys))
@timer
def results(self, study, repertory, qlog=None, name=None):
self._study = study
if name is None:
name = study.name.replace(" ", "_")
results = super(AdisTSlc, self).results(study, repertory, qlog, name=name)
return results
def export_func_dict(self):
return [
self._export_NUM,
self._export_DIF,
self._export_D90,
self._export_POLs,
]
@timer
def export(self, study, repertory, mage_rep, qlog=None, name="0"):
print("cmd solver adistslc : ", self._cmd_solver)
self._study = study
name = study.name.replace(" ", "_")
# Generate files
files = []
try:
for func in self.export_func_dict():
files = files + func(study, repertory, qlog, name=name)
self.export_additional_files(study, repertory, qlog, name=name)
self._export_REP(study, repertory, mage_rep, files, qlog, name=name)
return True
except Exception as e:
logger.error(f"Failed to export study to {self._type}")
logger_exception(e)
return False