adding adists solver 1

src/Solver/AdisTS.py

+# AdisTS.py -- Pamhyr
+# Copyright (C) 2023-2024  INRAE
+#
+# This program is free software: you can redistribute it and/or modify
+# it under the terms of the GNU General Public License as published by
+# the Free Software Foundation, either version 3 of the License, or
+# (at your option) any later version.
+#
+# This program is distributed in the hope that it will be useful,
+# but WITHOUT ANY WARRANTY; without even the implied warranty of
+# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+# GNU General Public License for more details.
+#
+# You should have received a copy of the GNU General Public License
+# along with this program.  If not, see <https://www.gnu.org/licenses/>.
+
+# -*- coding: utf-8 -*-
+
+import os
+import logging
+import numpy as np
+
+from tools import timer, trace, logger_exception
+
+from Solver.CommandLine import CommandLineSolver
+
+from Model.Results.Results import Results
+from Model.Results.River.River import River, Reach, Profile
+
+logger = logging.getLogger()
+
+def adists_file_open(filepath, mode):
+    f = open(filepath, mode)
+
+    if "w" in mode:
+        # Write header
+        comment = "*"
+        if ".ST" in filepath:
+            comment = "#"
+
+        f.write(
+            f"{comment} " +
+            "This file is generated by PAMHYR, please don't modify\n"
+        )
+
+    return f
+
+class AdisTS(CommandLineSolver):
+    _type = "adists"
+
+    def __init__(self, name):
+        super(AdisTS, self).__init__(name)
+
+        self._type = "adists"
+
+        self._cmd_input = ""
+        self._cmd_solver = "@path @input -o @output"
+        self._cmd_output = ""
+
+    @classmethod
+    def default_parameters(cls):
+        lst = super(AdisTS, cls).default_parameters()
+
+        lst += [
+            ("adists_implicitation_parameter", "0.5"),
+            ("adists_timestep_screen", "60"),
+            ("adists_timestep_bin", "60"),
+            ("adists_timestep_csv", "60"),
+            ("adists_timestep_mage", "60"),
+            ("adists_initial_concentration", "60"),
+            ("adists_output_points_csv", ""),
+        ]
+
+        return lst
+
+    def cmd_args(self, study):
+        lst = super(AdisTS, self).cmd_args(study)
+        return lst
+
+    def input_param(self):
+        name = self._study.name
+        return f"{name}.REP"
+
+    def _export_REP_additional_lines(self, study, rep_file):
+        lines = filter(
+            lambda line: line.is_enabled(),
+            study.river.rep_lines.lines
+        )
+
+        for line in lines:
+            rep_file.write(line.line)
+
+    def _export_REP(self, study, repertory, files, qlog, name="0"):
+        if qlog is not None:
+            qlog.put("Export REP file")
+
+        # Write header
+        with adists_file_open(
+                os.path.join(
+                    repertory, f"{name}.REP"
+                ), "w+"
+        ) as f:
+            f.write("confirmation=non\n")
+
+            for file in files:
+                EXT = file.split('.')[1]
+                f.write(f"{EXT} {file}\n")
+
+            self._export_REP_additional_lines(study, f)
+
+    @timer
+    def export(self, study, repertory, qlog=None):
+        self._study = study
+        name = study.name.replace(" ", "_")
+
+        self.export_additional_files(study, repertory, qlog, name=name)
+
+        return True
+
+################################
+# Adis-TS in low coupling mode #
+################################
+
+
+class AdisTSlc(AdisTS):
+    _type = "adistslc"
+
+    def __init__(self, name):
+        super(AdisTSlc, self).__init__(name)
+
+        self._type = "adistslc"
+
+    @classmethod
+    def default_parameters(cls):
+        lst = super(AdisTSlc, cls).default_parameters()
+
+        # Insert new parameters at specific position
+        names = list(map(lambda t: t[0], lst))
+
+        return lst
+
+    ##########
+    # Export #
+    ##########
+
+    def cmd_args(self, study):
+        lst = super(AdisTSlc, self).cmd_args(study)
+
+        return lst
+
+    def _export_NUM(self, study, repertory, qlog=None, name="0"):
+        files = []
+
+        if qlog is not None:
+            qlog.put("Export NUM file")
+
+        with adists_file_open(os.path.join(repertory, f"{name}.NUM"), "w+") as f:
+            files.append(f"{name}.NUM")
+
+            params = study.river.get_params(self.type).parameters
+            for p in params:
+                name = p.name\
+                        .replace("all_", "")\
+                        .replace("adists_", "")
+                value = p.value
+
+                logger.debug(
+                    f"export: NUM: {name}: {value} ({p.value})"
+                )
+
+                f.write(f"{name} {value}\n")
+
+        return files
+
+    def export_func_dict(self):
+        return [
+            self._export_NUM,
+        ]
+
+
+    @timer
+    def export(self, study, repertory, qlog=None, name="0"):
+        self._study = study
+        name = study.name.replace(" ", "_")
+
+        # Generate files
+        files = []
+
+        try:
+            for func in self.export_func_dict():
+                files = files + func(study, repertory, qlog, name=name)
+
+            self.export_additional_files(study, repertory, qlog, name=name)
+            self._export_REP(study, repertory, files, qlog, name=name)
+
+            return True
+        except Exception as e:
+            logger.error(f"Failed to export study to {self._type}")
+            logger_exception(e)
+            return False
+
+
+
+
+
+

src/Solver/Solvers.py

@@ -23,6 +23,7 @@ from Solver.Mage import (
     Mage7, Mage8, MageFake7,
 )
 from Solver.RubarBE import RubarBE
+from Solver.AdisTS import AdisTSlc
 
 _translate = QCoreApplication.translate
 
@@ -32,6 +33,7 @@ solver_long_name = {
     "mage8": "Mage v8",
     # "mage_fake7": "Mage fake v7",
     "rubarbe": "RubarBE",
+    "adistslc": "Adis-TS_LC",
 }
 
 solver_type_list = {
@@ -40,4 +42,5 @@ solver_type_list = {
     "mage8": Mage8,
     # "mage_fake7": MageFake7,
     "rubarbe": RubarBE,
+    "adistslc": AdisTSlc,
 }