Biotex

Biotex is a Automated Term Extractor (ATE) for Bio-medical terms (see here for more details).

This repository contains two ways of executing Biotex (Python and Java). A list of improvements made:

• Easy execution
• Python wrapper
• Parameters configuration without changing the source code
• ...

Installation

Requirements

• Python 3
• Java 7-8

Install

To make it works, clone this repository using :

git clone https://gitlab.irstea.fr/jacques.fize/biotex_python.git

Then, install the module by using the following commands :

cd biotex_python
(sudo) pip3 install .

Example

from biotex import BiotexWrapper
wrapper = BiotexWrapper(lang="fr")
corpus= [Load your corpus here]
wrapper.create_corpus_from_txt(corpus)
terminology = wrap.extract_terminology("output.txt")