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Quentin Yeche authored10941aa2
FROM condaforge/mambaforge
# variable for paths and env name
ARG dest_yml=/tmp/environment.yml
ARG env_name=rs-notebooks
# adding notebooks and other misc files
ADD *.ipynb /notebooks/
ADD sample.geojson /notebooks/
# creating user
RUN useradd -m beyond &&\
chown -R beyond:beyond /notebooks
# creating environment
ADD environment_jupyterhub.yml ${dest_yml}
RUN mamba env create --file ${dest_yml} --name ${env_name}
# setting up shell to use conda run
# this ensures that the CMD command is run in the correct environment
SHELL ["conda", "run", "--no-capture-output","-n", "rs-notebooks", "/bin/bash", "-c"]
# setting up jupyter lab to use bash as a terminal
# this ensures that the right environment is activated in the terminal
# should allow users to run pip installs from notebooks/jupyter lab terminal
# without encountering issues with different environments
RUN jupyter lab --generate-config && \
echo 'c.NotebookApp.terminado_settings = { "shell_command": ["/bin/bash"] }' >> /root/.jupyter/jupyter_lab_config.py
# setting up default landing folder
WORKDIR /notebooks
# choosing new user as default
USER beyond
CMD jupyterhub-singleuser