Commit 7dd34f83 authored by Quentin Yeche's avatar Quentin Yeche
Browse files

Merge branch 'remy.decoupes-main-patch-09460' into 'main'

Error of jupyterhub at start

See merge request beyond/remote_sensing_notebooks!1
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Showing with 16 additions and 12 deletions
+16 -12
......@@ -8,22 +8,30 @@ ARG env_name=rs-notebooks
ADD *.ipynb /notebooks/
ADD sample.geojson /notebooks/
# creating user
RUN useradd -m beyond &&\
chown -R beyond:beyond /notebooks
# creating environment
ADD environment_jupyterhub.yml ${dest_yml}
RUN mamba env create --file ${dest_yml} --name ${env_name}
# setting up shell to run in the correct environment
SHELL ["conda", "run", "-n", "rs-notebooks", "/bin/bash", "-c"]
# setting up shell to use conda run
# this ensures that the CMD command is run in the correct environment
SHELL ["conda", "run", "--no-capture-output","-n", "rs-notebooks", "/bin/bash", "-c"]
# setting up jupyter lab to use bash as a terminal
# this ensures that the right environment is activated in the terminal
# should allow users to run pip installs from notebooks/jupyter lab terminal
# without encountering issues with different environments
#RUN /opt/conda/envs/rs-notebooks/bin/jupyter lab --generate-config && \
#RUN jupyter lab --generate-config && \
# echo 'c.NotebookApp.terminado_settings = { "shell_command": ["/bin/bash"] }' >> /root/.jupyter/jupyter_lab_config.py
RUN jupyter lab --generate-config && \
echo 'c.NotebookApp.terminado_settings = { "shell_command": ["/bin/bash"] }' >> /root/.jupyter/jupyter_lab_config.py
# setting up default landing folder
WORKDIR /notebooks
CMD jupyterhub-singleuser
# choosing new user as default
USER beyond
CMD jupyterhub-singleuser
\ No newline at end of file
......@@ -10,16 +10,12 @@ dependencies:
- matplotlib
- folium
- rioxarray
- jupyterhub-singleuser=3.0.0
- jupyterhub==4.0.2
- jupyterlab
- pip
- pip:
- planetary-computer
- pystac-client
# with planetary-computer and pystac-client
# jsonschema==4.17.3 gets installed and breaks jupyter
# might be fixed in later version of jupyter, planetary-computer
# or pystac-client
- jsonschema==4.19.0
- rich
- stackstac
- bottleneck
......
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