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Commit 93e5e6df authored by patrick.lambert's avatar patrick.lambert
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with all the observers

parent 0dd43ae8
exploration_GR3D_process BasinImprovement DeplacementBasin SpawnerRunAnalysis develop v3.2.1.b V3.2.1.a
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data/input/northeastamerica/RIO_obs_NEA.xml
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...@@ -7,7 +7,7 @@ ...@@ -7,7 +7,7 @@
<title>North East America</title> <title>North East America</title>
<threshold>1000000</threshold> <threshold>1000000</threshold>
</environment.RIOBasinNetworkObserverWithContinent> </environment.RIOBasinNetworkObserverWithContinent>
<environment.RIOBasinNetworkObserverPresence> <environment.RIOBasinNetworkObserverPresence>
<title>Shad presence in North East America</title> <title>Shad presence in North East America</title>
<presenceFileName>data/input/northeastamerica/nea_presence.csv</presenceFileName> <presenceFileName>data/input/northeastamerica/nea_presence.csv</presenceFileName>
...@@ -16,40 +16,130 @@ ...@@ -16,40 +16,130 @@
</observers> </observers>
</fr.cemagref.observation.kernel.ObservablesHandler> </fr.cemagref.observation.kernel.ObservablesHandler>
</entry> </entry>
<!-- <entry> <java-class>species.DiadromousFishGroup</java-class> <fr.cemagref.observation.kernel.ObservablesHandler> <observers> <entry>
<fr.cemagref.observation.observers.jfreechart.TemporalSerieChart> <graphType>LINE</graphType> <title>Number of colonized <java-class>species.DiadromousFishGroup</java-class>
basins</title> <xAxisLabel>Time (season)</xAxisLabel> <yAxisLabel>number of basins</yAxisLabel> <variableName>getNbColonizedBasins</variableName> <fr.cemagref.observation.kernel.ObservablesHandler>
</fr.cemagref.observation.observers.jfreechart.TemporalSerieChart> <fr.cemagref.observation.observers.jfreechart.TemporalSerieChart> <observers>
<graphType>LINE</graphType> <title>Total Abundance</title> <xAxisLabel>Time (season)</xAxisLabel> <yAxisLabel>number of fishes</yAxisLabel> <fr.cemagref.observation.observers.jfreechart.TemporalSerieChart>
<variableName>getFishEffective</variableName> </fr.cemagref.observation.observers.jfreechart.TemporalSerieChart> <fr.cemagref.observation.observers.jfreechart.TemporalSerieChart> <graphType>LINE</graphType>
<graphType>LINE</graphType> <title>Abundance of spawners</title> <xAxisLabel>Time (season)</xAxisLabel> <yAxisLabel>number <title>Number of colonized
of fishes</yAxisLabel> <variableName>getSpawnerEffective</variableName> </fr.cemagref.observation.observers.jfreechart.TemporalSerieChart> basins
<fr.cemagref.observation.observers.jfreechart.TemporalSerieChart> <graphType>LINE</graphType> <title>Abundance of male spawners</title> </title>
<xAxisLabel>Time (season)</xAxisLabel> <yAxisLabel>number of fishes</yAxisLabel> <variableName>getMaleSpawnerEffective</variableName> <xAxisLabel>Time (season)</xAxisLabel>
</fr.cemagref.observation.observers.jfreechart.TemporalSerieChart> <fr.cemagref.observation.observers.jfreechart.TemporalSerieChart> <yAxisLabel>number of basins</yAxisLabel>
<graphType>LINE</graphType> <title>Abundance of female spawners</title> <xAxisLabel>Time (season)</xAxisLabel> <yAxisLabel>number <variableName>getNbColonizedBasins</variableName>
of fishes</yAxisLabel> <variableName>getFemaleSpawnerEffective</variableName> </fr.cemagref.observation.observers.jfreechart.TemporalSerieChart> </fr.cemagref.observation.observers.jfreechart.TemporalSerieChart>
<miscellaneous.TemporalRangeSerieChart> <title>Range distribution</title> <xAxisLabel>Time (season)</xAxisLabel> <yAxisLabel>latitude</yAxisLabel> <fr.cemagref.observation.observers.jfreechart.TemporalSerieChart>
<variableName>getRangeDistributionWithLat</variableName> </miscellaneous.TemporalRangeSerieChart> <fr.cemagref.observation.observers.jfreechart.TemporalSerieChart> <graphType>LINE</graphType>
<graphType>LINE</graphType> <title>Mean age at first reproduction for female</title> <xAxisLabel>Time (season)</xAxisLabel> <title>Total Abundance</title>
<yAxisLabel>age (year)</yAxisLabel> <variableName>getMeanAgeOfFirstReprodutionForFemale</variableName> </fr.cemagref.observation.observers.jfreechart.TemporalSerieChart> <xAxisLabel>Time (season)</xAxisLabel>
<fr.cemagref.observation.observers.jfreechart.TemporalSerieChart> <graphType>LINE</graphType> <title>Mean age at first reproduction <yAxisLabel>number of fishes</yAxisLabel>
for male</title> <xAxisLabel>Time (season)</xAxisLabel> <yAxisLabel>age (year)</yAxisLabel> <variableName>getMeanAgeOfFirstReprodutionForMale</variableName> <variableName>getFishEffective</variableName>
</fr.cemagref.observation.observers.jfreechart.TemporalSerieChart> <fr.cemagref.observation.observers.jfreechart.TemporalSerieChart> </fr.cemagref.observation.observers.jfreechart.TemporalSerieChart>
<graphType>LINE</graphType> <title>Statistic for male spawners age</title> <xAxisLabel>Time (season)</xAxisLabel> <yAxisLabel></yAxisLabel> <fr.cemagref.observation.observers.jfreechart.TemporalSerieChart>
<variableName>computeMaleSpawnerForFirstTimeSummaryStatistic</variableName> </fr.cemagref.observation.observers.jfreechart.TemporalSerieChart> <graphType>LINE</graphType>
<fr.cemagref.observation.observers.jfreechart.TemporalSerieChart> <graphType>LINE</graphType> <title>Statistic for female <title>Abundance of spawners</title>
spawners age</title> <xAxisLabel>Time (season)</xAxisLabel> <yAxisLabel></yAxisLabel> <variableName>computeFemaleSpawnerForFirstTimeSummaryStatistic</variableName> <xAxisLabel>Time (season)</xAxisLabel>
</fr.cemagref.observation.observers.jfreechart.TemporalSerieChart> <fr.cemagref.observation.observers.jfreechart.TemporalSerieChart> <yAxisLabel>number
<graphType>LINE</graphType> <title>Mean length at first reproduction for female</title> <xAxisLabel>Time (season)</xAxisLabel> of fishes
<yAxisLabel>length (cm)</yAxisLabel> <variableName>getMeanLengthOfFirstReprodutionForFemale</variableName> </fr.cemagref.observation.observers.jfreechart.TemporalSerieChart> </yAxisLabel>
<fr.cemagref.observation.observers.jfreechart.TemporalSerieChart> <graphType>LINE</graphType> <title>Mean length at first <variableName>getSpawnerEffective</variableName>
reproduction for male</title> <xAxisLabel>Time (season)</xAxisLabel> <yAxisLabel>length (cm)</yAxisLabel> <variableName>getMeanLengthOfFirstReprodutionForMale</variableName> </fr.cemagref.observation.observers.jfreechart.TemporalSerieChart>
</fr.cemagref.observation.observers.jfreechart.TemporalSerieChart> </observers> </fr.cemagref.observation.kernel.ObservablesHandler> <fr.cemagref.observation.observers.jfreechart.TemporalSerieChart>
</entry> <entry> <java-class>environment.RiverBasin</java-class> <fr.cemagref.observation.kernel.ObservablesHandler> <observers> <graphType>LINE</graphType>
<miscellaneous.TemporalSerieChartForBasin> <graphType>LINE</graphType> <title>Number of juveniles</title> <xAxisLabel>Time <title>Abundance of male spawners</title>
(season)</xAxisLabel> <yAxisLabel>number of juveniles</yAxisLabel> <variableName>getJuvenileNumber</variableName> </miscellaneous.TemporalSerieChartForBasin> <xAxisLabel>Time (season)</xAxisLabel>
<miscellaneous.TemporalSerieChartForBasin> <graphType>LINE</graphType> <title>% Autochtone</title> <xAxisLabel>Time (season)</xAxisLabel> <yAxisLabel>number of fishes</yAxisLabel>
<yAxisLabel>% Autochtone</yAxisLabel> <variableName>getLastPercentageOfAutochtone</variableName> </miscellaneous.TemporalSerieChartForBasin> <variableName>getMaleSpawnerEffective</variableName>
</observers> </fr.cemagref.observation.kernel.ObservablesHandler> </entry> --> </fr.cemagref.observation.observers.jfreechart.TemporalSerieChart>
<fr.cemagref.observation.observers.jfreechart.TemporalSerieChart>
<graphType>LINE</graphType>
<title>Abundance of female spawners</title>
<xAxisLabel>Time (season)</xAxisLabel>
<yAxisLabel>number
of fishes
</yAxisLabel>
<variableName>getFemaleSpawnerEffective</variableName>
</fr.cemagref.observation.observers.jfreechart.TemporalSerieChart>
<miscellaneous.TemporalRangeSerieChart>
<title>Range distribution</title>
<xAxisLabel>Time (season)</xAxisLabel>
<yAxisLabel>latitude</yAxisLabel>
<variableName>getRangeDistributionWithLat</variableName>
</miscellaneous.TemporalRangeSerieChart>
<fr.cemagref.observation.observers.jfreechart.TemporalSerieChart>
<graphType>LINE</graphType>
<title>Mean age at first reproduction for female</title>
<xAxisLabel>Time (season)</xAxisLabel>
<yAxisLabel>age (year)</yAxisLabel>
<variableName>getMeanAgeOfFirstReprodutionForFemale</variableName>
</fr.cemagref.observation.observers.jfreechart.TemporalSerieChart>
<fr.cemagref.observation.observers.jfreechart.TemporalSerieChart>
<graphType>LINE</graphType>
<title>Mean age at first reproduction
for male
</title>
<xAxisLabel>Time (season)</xAxisLabel>
<yAxisLabel>age (year)</yAxisLabel>
<variableName>getMeanAgeOfFirstReprodutionForMale</variableName>
</fr.cemagref.observation.observers.jfreechart.TemporalSerieChart>
<fr.cemagref.observation.observers.jfreechart.TemporalSerieChart>
<graphType>LINE</graphType>
<title>Statistic for male spawners age</title>
<xAxisLabel>Time (season)</xAxisLabel>
<yAxisLabel></yAxisLabel>
<variableName>computeMaleSpawnerForFirstTimeSummaryStatistic</variableName>
</fr.cemagref.observation.observers.jfreechart.TemporalSerieChart>
<fr.cemagref.observation.observers.jfreechart.TemporalSerieChart>
<graphType>LINE</graphType>
<title>Statistic for female
spawners age
</title>
<xAxisLabel>Time (season)</xAxisLabel>
<yAxisLabel></yAxisLabel>
<variableName>computeFemaleSpawnerForFirstTimeSummaryStatistic</variableName>
</fr.cemagref.observation.observers.jfreechart.TemporalSerieChart>
<fr.cemagref.observation.observers.jfreechart.TemporalSerieChart>
<graphType>LINE</graphType>
<title>Mean length at first reproduction for female</title>
<xAxisLabel>Time (season)</xAxisLabel>
<yAxisLabel>length (cm)</yAxisLabel>
<variableName>getMeanLengthOfFirstReprodutionForFemale</variableName>
</fr.cemagref.observation.observers.jfreechart.TemporalSerieChart>
<fr.cemagref.observation.observers.jfreechart.TemporalSerieChart>
<graphType>LINE</graphType>
<title>Mean length at first
reproduction for male
</title>
<xAxisLabel>Time (season)</xAxisLabel>
<yAxisLabel>length (cm)</yAxisLabel>
<variableName>getMeanLengthOfFirstReprodutionForMale</variableName>
</fr.cemagref.observation.observers.jfreechart.TemporalSerieChart>
</observers>
</fr.cemagref.observation.kernel.ObservablesHandler>
</entry>
<entry>
<java-class>environment.RiverBasin</java-class>
<fr.cemagref.observation.kernel.ObservablesHandler>
<observers>
<miscellaneous.TemporalSerieChartForBasin>
<graphType>LINE</graphType>
<title>Number of juveniles</title>
<xAxisLabel>Time
(season)
</xAxisLabel>
<yAxisLabel>number of juveniles</yAxisLabel>
<variableName>getJuvenileNumber</variableName>
</miscellaneous.TemporalSerieChartForBasin>
<miscellaneous.TemporalSerieChartForBasin>
<graphType>LINE</graphType>
<title>% Autochtone</title>
<xAxisLabel>Time (season)</xAxisLabel>
<yAxisLabel>% Autochtone</yAxisLabel>
<variableName>getLastPercentageOfAutochtone</variableName>
</miscellaneous.TemporalSerieChartForBasin>
</observers>
</fr.cemagref.observation.kernel.ObservablesHandler>
</entry>
</hashtable> </hashtable>
\ No newline at end of file
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