Skip to content
GitLab
Menu
Projects
Groups
Snippets
Loading...
Help
Help
Support
Community forum
Keyboard shortcuts
?
Submit feedback
Contribute to GitLab
Sign in / Register
Toggle navigation
Menu
Open sidebar
Midoux Cedric
DIGESTOMIC
Commits
337827bf
Commit
337827bf
authored
Jul 29, 2019
by
Midoux Cedric
Browse files
Split with seqkit split2
parent
4ee40425
Changes
1
Hide whitespace changes
Inline
Side-by-side
README.md
View file @
337827bf
...
...
@@ -30,12 +30,8 @@ ln -s /projet/maiage/save/cmidoux/DIGESTOMIC/DATA/DIGESTOMIC_J80_B_26_11_15_S2_a
### Submit analysis
```
bash
awk
'NR<=2000000'
work/FGS/coassembly_FGS.faa
>
work/FGS/coassembly_FGS-1.faa
awk
'NR>=2000001&&NR<=4000000'
work/FGS/coassembly_FGS.faa
>
work/FGS/coassembly_FGS-2.faa
awk
'NR>=4000001&&NR<=6000000'
work/FGS/coassembly_FGS.faa
>
work/FGS/coassembly_FGS-3.faa
awk
'NR>=6000001&&NR<=8000000'
work/FGS/coassembly_FGS.faa
>
work/FGS/coassembly_FGS-4.faa
awk
'NR>=8000001&&NR<=10000000'
work/FGS/coassembly_FGS.faa
>
work/FGS/coassembly_FGS-5.faa
awk
'NR>=10000001'
work/FGS/coassembly_FGS.faa
>
work/FGS/coassembly_FGS-6.faa
conda activate seqkit-0.10.1
seqkit split2
--by-size
1000000
--out-dir
work/FGS/split work/FGS/coassembly_FGS.faa
```
*
Download files
...
...
Write
Preview
Markdown
is supported
0%
Try again
or
attach a new file
.
Attach a file
Cancel
You are about to add
0
people
to the discussion. Proceed with caution.
Finish editing this message first!
Cancel
Please
register
or
sign in
to comment