lsgrmController.h

#ifndef __LSGRM_CONTROLLER_H
#define __LSGRM_CONTROLLER_H
#include "lsgrmGetInternalMemory.h"
#include "lsgrmSplitter.h"
#include "lsgrmGraphOperations.h"
#include "itkObject.h"
#include "itkMacro.h"

namespace lsgrm
{
template<class TSegmenter>
class ITK_EXPORT Controller : public itk::Object
{
public:

  /** Standard class typedef */
  typedef Controller Self;
  typedef itk::Object                   Superclass;
  typedef itk::SmartPointer<Self>       Pointer;
  typedef itk::SmartPointer<const Self> ConstPointer;

  /** Runtime information support. */
  itkTypeMacro(Controller, itk::Object);

  /** Method for creation through the object factory. */
  itkNewMacro(Self);

  /* Some convenient typedefs */
  using SegmenterType = TSegmenter;
  using ImageType = typename SegmenterType::ImageType;
  using LabelImageType = typename SegmenterType::LabelImageType;
  using SegmentationParameterType = typename SegmenterType::ParamType;

  /* Default constructor and destructor. */
  Controller();
  ~Controller();

  void Modified();

  void RunSegmentation();

  void SetSpecificParameters(const SegmentationParameterType& params);
  void SetInputImage(ImageType * inputImage);
  void SetInternalMemoryAvailable(long long unsigned int v); // expecting a value in Mbytes.

  /* Accessors */
  void SetTilingModeNone(){m_TilingMode = LSGRM_TILING_NONE; Modified();};
  void SetTilingModeUser(){m_TilingMode = LSGRM_TILING_USER; Modified();};
  void SetTilingModeAuto(){m_TilingMode = LSGRM_TILING_AUTO; Modified();};

  typename LabelImageType::Pointer GetLabeledClusteredOutput();
  std::vector<std::string> GetTemporaryFilesList();

  itkGetMacro(Margin, unsigned int);

  itkGetMacro(TemporaryFilesPrefix, std::string);
  itkSetMacro(TemporaryFilesPrefix, std::string);

  itkGetMacro(Threshold, float);
  itkSetMacro(Threshold, float);

  itkGetMacro(NumberOfIterations, unsigned int);
  itkSetMacro(NumberOfIterations, unsigned int);

  itkGetMacro(NbTilesX, unsigned int);
  itkSetMacro(NbTilesX, unsigned int);

  itkGetMacro(NbTilesY, unsigned int);
  itkSetMacro(NbTilesY, unsigned int);