v1.0.9.28 many typo revisions in documentation

DESCRIPTION

 Package: airGR
 Type: Package
 Title: Suite of GR Hydrological Models for Precipitation-Runoff Modelling
-Version: 1.0.9.27
+Version: 1.0.9.28
 Date: 2017-08-18
 Authors@R: c(
   person("Laurent", "Coron", role = c("aut", "trl")),

man/CreateRunOptions.Rd

@@ -85,17 +85,20 @@ The actual length of this warm-up might be shorter depending on data availabilit
 (2) Customisation of initialisation options:
 
 \itemize{
-\item \code{IndPeriod_WarmUp} can be used to specify the indices of the warm-up period (within the time series prepared in InputsModel). \cr
-- remark 1:	for most common cases, indices corresponding to one or several years preceding \code{IndPeriod_Run} are used (e.g. \code{IndPeriod_WarmUp = 1000:1365} and \code{IndPeriod_Run = 1366:5000)}. \cr
+\item \code{IndPeriod_WarmUp} can be used to specify the indices of the warm-up period (within the time series prepared in InputsModel).
+\itemize{
+\item remark 1:	for most common cases, indices corresponding to one or several years preceding \code{IndPeriod_Run} are used (e.g. \code{IndPeriod_WarmUp = 1000:1365} and \code{IndPeriod_Run = 1366:5000)}. \cr
 However, it is also possible to perform a long-term initialisation if other indices than the warm-up ones are set in \code{IndPeriod_WarmUp} (e.g. \code{IndPeriod_WarmUp = c(1:5000, 1:5000, 1:5000, 1000:1365)}). \cr
-- remark 2:	it is also possible to completely disable the warm-up period when using \code{IndPeriod_WarmUp = 0L}. This is necessary if you want \code{IniStates} and / or \code{IniResLevels} to be the actual initial values of the model variables from your simulation (e.g. to perform a forecast form a given initial state). 
-
-\item \code{IniStates} and \code{IniResLevels} can be used to specify the initial model states. \cr
-- remark 1: \code{IniStates} and \code{IniResLevels} can not be used with GR1A. \cr
-- remark 2:	if \code{IniStates} is used, two possibilities are offered:
-   - \code{IniStates} can be set to the \code{$StateEnd} output of a previous \code{RunModel} call, as \code{$StateEnd} already respects the correct format; \cr
-   -  \code{IniStates} can be created with the \code{\link{CreateIniStates}} function.
-- remark 3:	in addition to \code{IniStates}, \code{IniResLevels} allows to set the filling rate of the production and routing stores for the GR models. For instance for GR4J and , GR5J: \code{IniResLevels = c(0.3, 0.5)} should be used to obtain initial fillings of 30 \% and 50 \% for the production and routing stores, respectively. For GR6J, \code{IniResLevels = c(0.3, 0.5, 0)} shold be use to obtain initial fillings of 30 \% and 50 \% for the production, routing stores and 0 mm for the exponential store, respectively. \code{IniResLevels} is optional and can only be used if \code{IniStates} is also defined (the state values corresponding to these two other stores in \code{IniStates} are not used in such case). \cr \cr
+\item remark 2:	it is also possible to completely disable the warm-up period when using \code{IndPeriod_WarmUp = 0L}. This is necessary if you want \code{IniStates} and/or \code{IniResLevels} to be the actual initial values of the model variables from your simulation (e.g. to perform a forecast form a given initial state). 
+}
+\item \code{IniStates} and \code{IniResLevels} can be used to specify the initial model states.
+\itemize{
+\item remark 1: \code{IniStates} and \code{IniResLevels} can not be used with GR1A. \cr
+\item remark 2:	if \code{IniStates} is used, two possibilities are offered:\cr
+- \code{IniStates} can be set to the \emph{$StateEnd} output of a previous \code{RunModel} call, as \emph{$StateEnd} already respects the correct format; \cr
+- \code{IniStates} can be created with the \code{\link{CreateIniStates}} function.
+\item remark 3:	in addition to \code{IniStates}, \code{IniResLevels} allows to set the filling rate of the production and routing stores for the GR models. For instance for GR4J and GR5J: \code{IniResLevels = c(0.3, 0.5)} should be used to obtain initial fillings of 30 \% and 50 \% for the production and routing stores, respectively. For GR6J, \code{IniResLevels = c(0.3, 0.5, 0)} shold be use to obtain initial fillings of 30 \% and 50 \% for the production, routing stores and 0 mm for the exponential store, respectively. \code{IniResLevels} is optional and can only be used if \code{IniStates} is also defined (the state values corresponding to these two other stores in \code{IniStates} are not used in such case).
+}
 }
 }
 

man/DataAltiExtrapolation_Valery.Rd

@@ -59,7 +59,7 @@ Elevation layers of equal surface are created the 101 elevation quantiles (\code
 and the number requested elevation layers (\code{NLayers}). \cr
 Forcing data (precipitation and air temperature) are extrapolated using gradients from Valery (2010).
 (e.g. gradP = 0.0004 [m-1] for France and gradT = 0.434 [°C/100m] for January, 1st). \cr
-This function is used by the \code{CreateInputsModel} function.
+This function is used by the \code{\link{CreateInputsModel}} function.
 }