CellTrackerSettingsManual.m 15.4 KB
Newer Older
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159 160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177 178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195 196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211 212 213 214 215 216 217 218 219 220 221 222 223 224 225 226 227 228 229 230 231 232 233 234 235 236 237 238 239 240 241 242 243 244 245 246 247 248 249 250 251 252 253 254 255 256 257 258 259 260 261 262 263 264 265 266 267 268 269 270 271 272 273 274 275 276 277 278 279 280 281 282 283 284 285 286 287 288 289 290 291 292 293 294 295 296 297 298 299 300 301 302 303 304 305 306 307 308 309 310 311 312 313 314 315 316 317 318 319 320 321 322 323 324 325 326 327 328 329 330 331 332 333 334 335 336 337 338 339 340 341 342 343 344 345 346 347 348 349 350 351 352 353 354 355 356 357 358 359 360 361 362 363 364 365 366 367 368 369 370 371 372 373 374 375 376 377 378 379 380 381 382 383 384 385 386 387 388 389 390 391 392 393 394 395 396 397 398 399 400 401 402 403 404 405 406 407 408 409 410 411 412 413 414 415 416 417 418 419 420 421 422 423 424 425 426
function varargout = CellTrackerSettingsManual(varargin)
% CELLTRACKERSETTINGSMANUAL M-file for CellTrackerSettingsManual.fig
%      CELLTRACKERSETTINGSMANUAL, by itself, creates a new CELLTRACKERSETTINGSMANUAL or raises the existing
%      singleton*.
%
%      H = CELLTRACKERSETTINGSMANUAL returns the handle to a new CELLTRACKERSETTINGSMANUAL or the handle to
%      the existing singleton*.
%
%      CELLTRACKERSETTINGSMANUAL('CALLBACK',hObject,eventData,handles,...) calls the local
%      function named CALLBACK in CELLTRACKERSETTINGSMANUAL.M with the given input arguments.
%
%      CELLTRACKERSETTINGSMANUAL('Property','Value',...) creates a new CELLTRACKERSETTINGSMANUAL or raises the
%      existing singleton*.  Starting from the left, property value pairs are
%      applied to the GUI before CellTrackerSettingsManual_OpeningFcn gets called.  An
%      unrecognized property name or invalid value makes property application
%      stop.  All inputs are passed to CellTrackerSettingsManual_OpeningFcn via varargin.
%
%      *See GUI Options on GUIDE's Tools menu.  Choose "GUI allows only one
%      instance to run (singleton)".
%
% See also: GUIDE, GUIDATA, GUIHANDLES

% Edit the above text to modify the response to help CellTrackerSettingsManual

% Last Modified by GUIDE v2.5 30-Jun-2015 10:18:11

% Begin initialization code - DO NOT EDIT
gui_Singleton = 1;
gui_State = struct('gui_Name',       mfilename, ...
    'gui_Singleton',  gui_Singleton, ...
    'gui_OpeningFcn', @CellTrackerSettingsManual_OpeningFcn, ...
    'gui_OutputFcn',  @CellTrackerSettingsManual_OutputFcn, ...
    'gui_LayoutFcn',  [] , ...
    'gui_Callback',   []);
if nargin && ischar(varargin{1})
    gui_State.gui_Callback = str2func(varargin{1});
end

if nargout
    [varargout{1:nargout}] = gui_mainfcn(gui_State, varargin{:});
else
    gui_mainfcn(gui_State, varargin{:});
end
% End initialization code - DO NOT EDIT


% --- Executes just before CellTrackerSettingsManual is made visible.
function CellTrackerSettingsManual_OpeningFcn(hObject, eventdata, handles, varargin)
% This function has no output args, see OutputFcn.
% hObject    handle to figure
% eventdata  reserved - to be defined in a future version of MATLAB
% handles    structure with handles and user data (see GUIDATA)
% varargin   command line arguments to CellTrackerSettingsManual (see VARARGIN)

global f_handles

f_handles.flagGUIclosedWithXrun = 1;

% Choose default command line output for CellTrackerSettingsManual
handles.output = hObject;

% Update handles structure
guidata(hObject, handles);

% UIWAIT makes CellTrackerSettingsManual wait for user response (see UIRESUME)
% uiwait(handles.figure1);

%% set parameters to show
try
    
    % Close the other windows
    if ishandle(f_handles.h_GUIsetG); close(f_handles.h_GUIsetG); end;
    if ishandle(f_handles.h_GUIsetT); close(f_handles.h_GUIsetT); end;
    if ishandle(f_handles.h_GUIsetS); close(f_handles.h_GUIsetS); end;
    %if ishandle(f_handles.h_GUIsetM); close(f_handles.h_GUIsetM); end;
    if ishandle(f_handles.h_GUIstatistics); close(f_handles.h_GUIstatistics); end;
    
    % Interpolation selection
    if f_handles.DynamicInterpolation == 1
        set(handles.radiobutton1, 'Value', 1);
        set(handles.radiobutton2, 'Value', 0);
    else
        set(handles.radiobutton1, 'Value', 0);
        set(handles.radiobutton2, 'Value', 1);
    end
    
    % Method selection
    if f_handles.CellMatchingModality == 0
        set(handles.radiobutton3, 'Value', 1);
        set(handles.radiobutton4, 'Value', 0);
    else
        set(handles.radiobutton3, 'Value', 0);
        set(handles.radiobutton4, 'Value', 1);
    end
    
    inpImage = imread(f_handles.PathImgCurrent, 1);
    [rowI, colI, chI] = size(inpImage);
    numImages =  length(imfinfo(f_handles.PathImgCurrent));
    
    % Setting show
    v = floor(get(f_handles.h_slider1, 'Value'));
    set(handles.edit01, 'String', num2str(v));
    f_handles.TrackFirstPoint = v;
    set(handles.edit02, 'String', num2str(numImages));
    f_handles.TrackLastPoint = numImages;
    set(handles.edit03, 'String', num2str(f_handles.TrackStepPoint));
    %f_handles.TrackStepPoint = 1;
    
    % Check parameters
    if f_handles.CellMaxDisp<1 || f_handles.CellMaxDisp>ceil(min([rowI, colI]))
        f_handles.CellMaxDisp = ceil(min([rowI, colI])/10);
    end
    if f_handles.CellTempSize<1 || f_handles.CellTempSize>ceil(min([rowI, colI]))
        f_handles.CellTempSize = ceil(min([rowI, colI])/10);
    end
    
    % Set parameters
    set(handles.edit04, 'String', num2str(f_handles.CellMaxDisp));
    set(handles.edit05, 'String', num2str(f_handles.CellTempSize));
    
catch ME1
    Message = {'Wrong parameter set.', ...
        ' '};
    msgbox(Message,'Message')
end


% --- Outputs from this function are returned to the command line.
function varargout = CellTrackerSettingsManual_OutputFcn(hObject, eventdata, handles)
% varargout  cell array for returning output args (see VARARGOUT);
% hObject    handle to figure
% eventdata  reserved - to be defined in a future version of MATLAB
% handles    structure with handles and user data (see GUIDATA)

% Get default command line output from handles structure
varargout{1} = handles.output;


% --- Executes during object deletion, before destroying properties.
function figure1_DeleteFcn(hObject, eventdata, handles)
% hObject    handle to figure1 (see GCBO)
% eventdata  reserved - to be defined in a future version of MATLAB
% handles    structure with handles and user data (see GUIDATA)


% --- Executes when user attempts to close figure1.
function figure1_CloseRequestFcn(hObject, eventdata, handles)
% hObject    handle to figure1 (see GCBO)
% eventdata  reserved - to be defined in a future version of MATLAB
% handles    structure with handles and user data (see GUIDATA)

% Hint: delete(hObject) closes the figure
global f_handles

if f_handles.flagGUIclosedWithXrun ~= 0;
    f_handles.flagGUIclosedWithX = 1;
end

delete(hObject);


% --- Executes on button press in pb_saveSettings.
function pb_saveSettings_Callback(hObject, eventdata, handles)
% hObject    handle to pb_saveSettings (see GCBO)
% eventdata  reserved - to be defined in a future version of MATLAB
% handles    structure with handles and user data (see GUIDATA)

%% OK button to save settings
global f_handles

f_handles.flagGUIclosedWithXrun = 0;

try
    if get(handles.radiobutton1, 'Value')== 1
      
        % Check parameters
        inpImage = imread(f_handles.PathImgCurrent, 1);
        [rowI, colI, chI] = size(inpImage);
        numImages =  length(imfinfo(f_handles.PathImgCurrent));
        
        MaxDisp    = str2num(get(handles.edit04, 'String'));
        TempSize   = str2num(get(handles.edit05, 'String'));
        flag_ComputationOn = 1;
        if MaxDisp<1 || MaxDisp>ceil(min([rowI, colI]))
            flag_ComputationOn = 0;
        end
        if TempSize<1 || TempSize>ceil(min([rowI, colI]))
            flag_ComputationOn = 0;
        end
        
        if flag_ComputationOn == 1
            f_handles.DynamicInterpolation = 1;
            f_handles.CellMaxDisp  = str2num(get(handles.edit04, 'String'));
            f_handles.CellTempSize = str2num(get(handles.edit05, 'String'));
        
            % Update visualization
            if ishandle(f_handles.h_GUIsetM); close(f_handles.h_GUIsetM); end;
        
        else
            Message = {'Wrong parameter set.', ...
                ' '};
            msgbox(Message,'Message')
        end
    else
        f_handles.DynamicInterpolation = 0;
        
        % Update visualization
        if ishandle(f_handles.h_GUIsetM); close(f_handles.h_GUIsetM); end;
    end

catch ME1
    Message = {'Wrong parameter set.', ...
        ' '};
    msgbox(Message,'Message')
end


% --- Executes during object creation, after setting all properties.
function radiobutton1_CreateFcn(hObject, eventdata, handles)
% hObject    handle to radiobutton1 (see GCBO)
% eventdata  reserved - to be defined in a future version of MATLAB
% handles    empty - handles not created until after all CreateFcns called


% --- Executes on button press in radiobutton1.
function radiobutton1_Callback(hObject, eventdata, handles)
% hObject    handle to radiobutton1 (see GCBO)
% eventdata  reserved - to be defined in a future version of MATLAB
% handles    structure with handles and user data (see GUIDATA)

% Hint: get(hObject,'Value') returns toggle state of radiobutton1
global f_handles

if get(hObject,'Value') == 1
    set(handles.radiobutton2, 'Value', 0);
    f_handles.DynamicInterpolation = 1;
else
    set(handles.radiobutton2, 'Value', 1);
    f_handles.DynamicInterpolation = 0;
end


% --- Executes during object creation, after setting all properties.
function radiobutton2_CreateFcn(hObject, eventdata, handles)
% hObject    handle to radiobutton2 (see GCBO)
% eventdata  reserved - to be defined in a future version of MATLAB
% handles    empty - handles not created until after all CreateFcns called


% --- Executes on button press in radiobutton2.
function radiobutton2_Callback(hObject, eventdata, handles)
% hObject    handle to radiobutton2 (see GCBO)
% eventdata  reserved - to be defined in a future version of MATLAB
% handles    structure with handles and user data (see GUIDATA)

% Hint: get(hObject,'Value') returns toggle state of radiobutton2
global f_handles

if get(hObject,'Value') == 1
    set(handles.radiobutton1, 'Value', 0);
    f_handles.DynamicInterpolation = 0;
else 
    set(handles.radiobutton1, 'Value', 1);
    f_handles.DynamicInterpolation = 1;
end


% --- Executes during object creation, after setting all properties.
function edit01_CreateFcn(hObject, eventdata, handles)
% hObject    handle to edit01 (see GCBO)
% eventdata  reserved - to be defined in a future version of MATLAB
% handles    empty - handles not created until after all CreateFcns called

% Hint: edit controls usually have a white background on Windows.
%       See ISPC and COMPUTER.
if ispc && isequal(get(hObject,'BackgroundColor'), get(0,'defaultUicontrolBackgroundColor'))
    set(hObject,'BackgroundColor','white');
end


function edit01_Callback(hObject, eventdata, handles)
% hObject    handle to edit01 (see GCBO)
% eventdata  reserved - to be defined in a future version of MATLAB
% handles    structure with handles and user data (see GUIDATA)

% Hints: get(hObject,'String') returns contents of edit01 as text
%        str2double(get(hObject,'String')) returns contents of edit01 as a double
global f_handles;

f_handles.TrackFirstPoint = str2double(get(hObject,'String'));


% --- Executes during object creation, after setting all properties.
function edit02_CreateFcn(hObject, eventdata, handles)
% hObject    handle to edit02 (see GCBO)
% eventdata  reserved - to be defined in a future version of MATLAB
% handles    empty - handles not created until after all CreateFcns called

% Hint: edit controls usually have a white background on Windows.
%       See ISPC and COMPUTER.
if ispc && isequal(get(hObject,'BackgroundColor'), get(0,'defaultUicontrolBackgroundColor'))
    set(hObject,'BackgroundColor','white');
end


function edit02_Callback(hObject, eventdata, handles)
% hObject    handle to edit02 (see GCBO)
% eventdata  reserved - to be defined in a future version of MATLAB
% handles    structure with handles and user data (see GUIDATA)

% Hints: get(hObject,'String') returns contents of edit02 as text
%        str2double(get(hObject,'String')) returns contents of edit02 as a double
global f_handles;

f_handles.TrackLastPoint = str2double(get(hObject,'String'));


% --- Executes during object creation, after setting all properties.
function edit03_CreateFcn(hObject, eventdata, handles)
% hObject    handle to edit03 (see GCBO)
% eventdata  reserved - to be defined in a future version of MATLAB
% handles    empty - handles not created until after all CreateFcns called

% Hint: edit controls usually have a white background on Windows.
%       See ISPC and COMPUTER.
if ispc && isequal(get(hObject,'BackgroundColor'), get(0,'defaultUicontrolBackgroundColor'))
    set(hObject,'BackgroundColor','white');
end


function edit03_Callback(hObject, eventdata, handles)
% hObject    handle to edit03 (see GCBO)
% eventdata  reserved - to be defined in a future version of MATLAB
% handles    structure with handles and user data (see GUIDATA)

% Hints: get(hObject,'String') returns contents of edit03 as text
%        str2double(get(hObject,'String')) returns contents of edit03 as a double
global f_handles;

f_handles.TrackStepPoint = str2double(get(hObject,'String'));


% --- Executes during object creation, after setting all properties.
function edit04_CreateFcn(hObject, eventdata, handles)
% hObject    handle to edit04 (see GCBO)
% eventdata  reserved - to be defined in a future version of MATLAB
% handles    empty - handles not created until after all CreateFcns called

% Hint: edit controls usually have a white background on Windows.
%       See ISPC and COMPUTER.
if ispc && isequal(get(hObject,'BackgroundColor'), get(0,'defaultUicontrolBackgroundColor'))
    set(hObject,'BackgroundColor','white');
end


function edit04_Callback(hObject, eventdata, handles)
% hObject    handle to edit04 (see GCBO)
% eventdata  reserved - to be defined in a future version of MATLAB
% handles    structure with handles and user data (see GUIDATA)

% Hints: get(hObject,'String') returns contents of edit04 as text
%        str2double(get(hObject,'String')) returns contents of edit04 as a double
global f_handles;

f_handles.CellMaxDisp = str2double(get(hObject,'String'));


% --- Executes during object creation, after setting all properties.
function edit05_CreateFcn(hObject, eventdata, handles)
% hObject    handle to edit05 (see GCBO)
% eventdata  reserved - to be defined in a future version of MATLAB
% handles    empty - handles not created until after all CreateFcns called

% Hint: edit controls usually have a white background on Windows.
%       See ISPC and COMPUTER.
if ispc && isequal(get(hObject,'BackgroundColor'), get(0,'defaultUicontrolBackgroundColor'))
    set(hObject,'BackgroundColor','white');
end


function edit05_Callback(hObject, eventdata, handles)
% hObject    handle to edit05 (see GCBO)
% eventdata  reserved - to be defined in a future version of MATLAB
% handles    structure with handles and user data (see GUIDATA)

% Hints: get(hObject,'String') returns contents of edit05 as text
%        str2double(get(hObject,'String')) returns contents of edit05 as a double
global f_handles;

f_handles.CellTempSize = str2double(get(hObject,'String'));


% --- Executes on button press in radiobutton3.
function radiobutton3_Callback(hObject, eventdata, handles)
% hObject    handle to radiobutton3 (see GCBO)
% eventdata  reserved - to be defined in a future version of MATLAB
% handles    structure with handles and user data (see GUIDATA)

% Hint: get(hObject,'Value') returns toggle state of radiobutton3
global f_handles

if get(hObject,'Value') == 1
    set(handles.radiobutton4, 'Value', 0);
    f_handles.CellMatchingModality = 0;
else
    set(handles.radiobutton4, 'Value', 1);
    f_handles.CellMatchingModality = 1;
end


% --- Executes on button press in radiobutton4.
function radiobutton4_Callback(hObject, eventdata, handles)
% hObject    handle to radiobutton4 (see GCBO)
% eventdata  reserved - to be defined in a future version of MATLAB
% handles    structure with handles and user data (see GUIDATA)

% Hint: get(hObject,'Value') returns toggle state of radiobutton4
global f_handles

if get(hObject,'Value') == 1
    set(handles.radiobutton3, 'Value', 0);
    f_handles.CellMatchingModality = 1;
else
    set(handles.radiobutton3, 'Value', 1);
    f_handles.CellMatchingModality = 0;
end