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Midoux Cedric
workflow_metagenomics
Commits
acb0e2b9
Commit
acb0e2b9
authored
Nov 15, 2019
by
Midoux Cedric
Browse files
snakemake 5.7.4
parent
80504772
Changes
6
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RunSnake.sh
View file @
acb0e2b9
#!/bin/bash
#!/bin/bash
export
PYTHONPATH
=
''
export
PYTHONPATH
=
''
source
activate snakemake-5.
4.5
source
activate snakemake-5.
7.4
mkdir
-p
./.log/out/ ./.log/err/
mkdir
-p
./.log/out/ ./.log/err/
...
...
RunSnake_graph.sh
View file @
acb0e2b9
#!/bin/bash
#!/bin/bash
export
PYTHONPATH
=
''
export
PYTHONPATH
=
''
source
activate snakemake-5.
4.5
source
activate snakemake-5.
7.4
mkdir
-p
report/
mkdir
-p
report/
...
...
RunSnake_printshellcmds-forceall.sh
View file @
acb0e2b9
#!/bin/bash
#!/bin/bash
export
PYTHONPATH
=
''
export
PYTHONPATH
=
''
source
activate snakemake-5.
4.5
source
activate snakemake-5.
7.4
snakemake
\
snakemake
\
--snakefile
$1
\
--snakefile
$1
\
...
...
RunSnake_printshellcmds.sh
View file @
acb0e2b9
#!/bin/bash
#!/bin/bash
export
PYTHONPATH
=
''
export
PYTHONPATH
=
''
source
activate snakemake-5.
4.5
source
activate snakemake-5.
7.4
snakemake
\
snakemake
\
--snakefile
$1
\
--snakefile
$1
\
...
...
RunSnake_report.sh
View file @
acb0e2b9
#!/bin/bash
#!/bin/bash
export
PYTHONPATH
=
''
export
PYTHONPATH
=
''
source
activate snakemake-5.
4.5
source
activate snakemake-5.
7.4
mkdir
-p
report/
mkdir
-p
report/
...
...
jobscript.sh
View file @
acb0e2b9
#!/bin/sh
#!/bin/sh
# properties = {properties}
# properties = {properties}
export
PYTHONPATH
=
''
export
PYTHONPATH
=
''
source
activate snakemake-5.
4.5
source
activate snakemake-5.
7.4
{
exec_job
}
{
exec_job
}
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