Refs #137

- Replace wrong test `RunOptions$IndPeriod_WarmUp != 0L` by `!identical(RunOptions$IndPeriod_WarmUp, 0L)`
- Manage that WarmUpQsim is optional during calibration

Refs #137

- return a RunOptions list from .GetOutputsModelGR (UtilsRunModel) with WarmUpQsim and Param, and remove the specific class of WarmUpQsim
Refs #137

- For detection of number of parameters in regularisation

Refs #111

- Add explicit management of "QsimDown" and "Qsim_m3" items to OutputsModel
- Remove OutputsModel$StateEnd from regression tests because of changing in class sorting of IniStates object

Refs #132

Refs #132

- add example of regularisation in vignette V05
- fix wrong error message in CreateInputsCrit
- fix issues with number of model parameter with SD models
- fix issues with OutputsModel$Param in RunModelLag
- fix issues with OutputsModel$Param during calibration in CreateRunOptions

Refs #111

Refs  #131, in-wop/airGRiwrm#50

Refs #123

- Implementation and tests

Refs #123

Refs #110

Refs #109

- Correct bug on warning trigger in RunModel_Lag
- Add test for warning in SImulation and no warning in calibration

Refs #100

Refs #100

Refs #112

Refs #103

- Add commentaries with debug messages

Fix #103, #104

Fix #102

- Add error IniStates length in RunModel_Lag
- Add corresponding expectation in testhat

Refs #78

Refs #78

Refs #78

Refs #34

Refs #34

Refs #34

Refs #34

- The lag parameter is now in first position instead of the last one

Refs #34, #60